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Report for CCDS42906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42906.1 Public Homo sapiens 21 SAMSN1 24 110 108 CCDS HistoryNCBI Gene:64092Re-query CCDS DB by CCDS ID:42906.1Re-query CCDS DB by GeneID:64092See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42906.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400566.6 ENSP00000383411.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400566.6Link to Ensembl Protein Viewer:ENSP00000383411.2Re-query CCDS DB by Nucleotide ID:ENST00000400566Re-query CCDS DB by Protein ID:ENSP00000383411
Original member Current member NCBI NM_022136.5 NP_071419.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022136.5Link to Protein Sequence:NP_071419.3Re-query CCDS DB by Nucleotide ID:NM_022136Re-query CCDS DB by Protein ID:NP_071419Link to BLAST:NP_071419.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071419.3 373 Q9NSI8-1 373 100% 0 0

Chromosomal Locations for CCDS 42906.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 14485912 14486114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14498442 14498592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14500529 14500735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14510310 14510461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14512444 14512573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14516892 14517041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14521150 14521221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14546205 14546261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGCTCAAGAGAAAGCCATCCAATGTTTCAGAGAAGGAGAAACATCAAAAACCAAAGCGAAGCAGCAGTT
TTGGGAATTTCGATCGTTTTCGGAATAATTCTTTATCAAAACCAGATGATTCAACTGAGGCACATGAAGG
AGATCCCACAAATGGAAGTGGAGAACAAAGTAAAACTTCAAATAATGGAGGCGGTTTGGGTAAAAAAATG
AGAGCTATTTCATGGACAATGAAGAAAAAAGTGGGTAAAAAGTACATCAAAGCCCTTTCTGAGGAAAAGG
ATGAGGAAGATGGAGAGAATGCCCACCCATATAGAAACAGTGACCCTGTGATTGGGACCCACACAGAGAA
GGTGTCCCTCAAAGCCAGTGACTCCATGGATAGTCTCTACAGTGGACAGAGCTCATCAAGTGGCATAACA
AGCTGTTCAGATGGTACAAGTAACCGGGACAGCTTTCGACTGGATGACGATGGCCCCTATTCAGGACCAT
TCTGTGGCCGTGCCAGAGTGCATACGGATTTCACGCCAAGTCCCTATGACACTGACTCCCTCAAAATCAA
GAAAGGAGACATCATAGACATTATTTGCAAAACACCAATGGGGATGTGGACAGGAATGTTGAACAATAAA
GTGGGAAACTTCAAATTCATTTATGTGGATGTCATCTCAGAAGAGGAAGCAGCCCCCAAGAAAATAAAGG
CAAACCGAAGGAGTAACAGCAAAAAATCCAAGACTCTGCAGGAGTTCCTAGAGAGGATTCATCTGCAGGA
ATACACCTCAACACTTTTGCTCAATGGTTATGAGACTCTAGAAGATTTAAAAGATATAAAAGAGAGTCAC
CTCATTGAATTAAATATTGAAAACCCAGATGACAGAAGAAGGTTACTATCAGCTGCTGAAAACTTCCTTG
AAGAAGAAATTATTCAAGAGCAAGAAAATGAACCTGAGCCCCTATCCTTGAGCTCAGACATCTCCTTAAA
TAAGTCACAGTTAGATGACTGCCCAAGGGACTCTGGTTGCTATATCTCATCAGGAAATTCAGATAATGGC
AAAGAGGATCTGGAGTCTGAAAATCTGTCTGACATGGTACATAAGATTATTATCACAGAGCCAAGTGACT
GA

Translation (373 aa):
MLKRKPSNVSEKEKHQKPKRSSSFGNFDRFRNNSLSKPDDSTEAHEGDPTNGSGEQSKTSNNGGGLGKKM
RAISWTMKKKVGKKYIKALSEEKDEEDGENAHPYRNSDPVIGTHTEKVSLKASDSMDSLYSGQSSSSGIT
SCSDGTSNRDSFRLDDDGPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNK
VGNFKFIYVDVISEEEAAPKKIKANRRSNSKKSKTLQEFLERIHLQEYTSTLLLNGYETLEDLKDIKESH
LIELNIENPDDRRRLLSAAENFLEEEIIQEQENEPEPLSLSSDISLNKSQLDDCPRDSGCYISSGNSDNG
KEDLESENLSDMVHKIIITEPSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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