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Report for CCDS43281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43281.1 Public Homo sapiens 4 MFAP3L 24 110 108 CCDS HistoryNCBI Gene:9848Re-query CCDS DB by CCDS ID:43281.1Re-query CCDS DB by GeneID:9848See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43281.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393704.3 ENSP00000377307.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393704.3Link to Ensembl Protein Viewer:ENSP00000377307.3Re-query CCDS DB by Nucleotide ID:ENST00000393704Re-query CCDS DB by Protein ID:ENSP00000377307
Original member Current member NCBI NM_001009554.4 NP_001009554.1 Accepted alive Link to Nucleotide Sequence:NM_001009554.4Link to Protein Sequence:NP_001009554.1Re-query CCDS DB by Nucleotide ID:NM_001009554Re-query CCDS DB by Protein ID:NP_001009554Link to BLAST:NP_001009554.1
Original member Current member NCBI NM_001301647.2 NP_001288576.1 Accepted alive Link to Nucleotide Sequence:NM_001301647.2Link to Protein Sequence:NP_001288576.1Re-query CCDS DB by Nucleotide ID:NM_001301647Re-query CCDS DB by Protein ID:NP_001288576Link to BLAST:NP_001288576.1
Original member Current member NCBI NM_001301648.2 NP_001288577.1 Accepted alive Link to Nucleotide Sequence:NM_001301648.2Link to Protein Sequence:NP_001288577.1Re-query CCDS DB by Nucleotide ID:NM_001301648Re-query CCDS DB by Protein ID:NP_001288577Link to BLAST:NP_001288577.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009554.1 306 O75121-2 306 100% 0 0
NP_001288576.1 306 O75121-2 306 100% 0 0
NP_001288577.1 306 O75121-2 306 100% 0 0

Chromosomal Locations for CCDS 43281.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 169991378 169992298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGCACGACAGCGGCCTCCTGAACATCACCAAGGTATCCTTCTCAGACCGAGGTAAATACACGTGTGTGG
CTTCTAACATCTACGGCACCGTGAACAACACGGTGACCTTGCGCGTCATCTTCACTTCTGGAGACATGGG
TGTCTACTACATGGTCGTGTGCCTGGTGGCCTTCACCATCGTCATGGTCCTCAATATCACCCGCCTGTGC
ATGATGAGCAGCCATCTAAAGAAGACTGAGAAGGCCATCAATGAGTTCTTTAGGACCGAAGGTGCAGAGA
AGCTGCAGAAGGCATTTGAGATCGCCAAGCGCATCCCCATCATCACCTCCGCCAAAACTCTAGAGCTTGC
CAAAGTCACCCAGTTCAAAACCATGGAGTTCGCCCGCTACATCGAAGAGCTTGCCAGGAGCGTGCCTCTG
CCGCCTCTCATTATGAACTGCAGGACTATCATGGAGGAGATTATGGAGGTGGTTGGGCTGGAGGAGCAGG
GGCAGAATTTTGTGAGGCATACTCCAGAGGGCCAGGAGGCCGCAGACAGGGATGAGGTCTACACAATCCC
CAACTCTCTGAAGCGGAGCGACTCCCCTGCCGCTGACTCGGACGCCTCATCGCTGCACGAGCAACCTCAG
CAAATTGCCATCAAGGTGTCAGTTCACCCGCAGTCCAAAAAAGAGCATGCAGATGACCAAGAGGGTGGAC
AGTTTGAAGTCAAAGATGTAGAGGAGACAGAACTGTCGGCGGAACATTCCCCCGAAACTGCAGAACCTTC
TACCGATGTCACGTCCACCGAGCTAACATCTGAAGAGCCAACACCTGTTGAGGTACCAGATAAGGTACTG
CCGCCAGCTTACCTGGAAGCCACAGAGCCAGCAGTGACACATGACAAAAACACCTGCATTATTTACGAAA
GCCATGTCTAA

Translation (306 aa):
MHDSGLLNITKVSFSDRGKYTCVASNIYGTVNNTVTLRVIFTSGDMGVYYMVVCLVAFTIVMVLNITRLC
MMSSHLKKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVPL
PPLIMNCRTIMEEIMEVVGLEEQGQNFVRHTPEGQEAADRDEVYTIPNSLKRSDSPAADSDASSLHEQPQ
QIAIKVSVHPQSKKEHADDQEGGQFEVKDVEETELSAEHSPETAEPSTDVTSTELTSEEPTPVEVPDKVL
PPAYLEATEPAVTHDKNTCIIYESHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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