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Report for CCDS43450.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43450.2 Public Homo sapiens 6 LST1 24 110 108 CCDS HistoryNCBI Gene:7940Re-query CCDS DB by CCDS ID:43450.2Re-query CCDS DB by GeneID:7940See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 43450.1
The coding region has been updated to represent an alternative splicing pattern, resulting in an extended N-terminus that is more supported by the available transcript and publication data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 43450.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000438075.7 ENSP00000391929.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000438075.7Link to Ensembl Protein Viewer:ENSP00000391929.3Re-query CCDS DB by Nucleotide ID:ENST00000438075Re-query CCDS DB by Protein ID:ENSP00000391929
Original member Current member NCBI NM_205839.3 NP_995311.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_205839.3Link to Protein Sequence:NP_995311.2Re-query CCDS DB by Nucleotide ID:NM_205839Re-query CCDS DB by Protein ID:NP_995311Link to BLAST:NP_995311.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_995311.2 97 O00453-1 97 100% 0 0

Chromosomal Locations for CCDS 43450.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31587300 31587318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31587641 31587733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31587944 31587966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31588518 31588676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGTTATCGCGGAATGATGATATATGTATCTACGGGGGCCTGGGGCTGGGCGGGCTCCTGCTTCTGGCAG
TGGTCCTTCTGTCCGCCTGCCTGTGTTGGCTGCATCGAAGAGTAAAGAGGCTGGAGAGGAGCTGGGCCCA
GGGCTCCTCAGAGCAGGAACTCCACTATGCATCTCTGCAGAGGCTGCCAGTGCCCAGCAGTGAGGGACCT
GACCTCAGGGGCAGAGACAAGAGAGGCACCAAGGAGGATCCAAGAGCTGACTATGCCTGCATTGCTGAGA
ACAAACCCACCTGA

Translation (97 aa):
MLSRNDDICIYGGLGLGGLLLLAVVLLSACLCWLHRRVKRLERSWAQGSSEQELHYASLQRLPVPSSEGP
DLRGRDKRGTKEDPRADYACIAENKPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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