NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43722.1 Public Homo sapiens 8 SFTPC 24 110 108 CCDS HistoryNCBI Gene:6440Re-query CCDS DB by CCDS ID:43722.1Re-query CCDS DB by GeneID:6440See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 43722.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318561.7 ENSP00000316152.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000318561.7Link to Ensembl Protein Viewer:ENSP00000316152.3Re-query CCDS DB by Nucleotide ID:ENST00000318561Re-query CCDS DB by Protein ID:ENSP00000316152
Original member Current member NCBI NM_001172410.2 NP_001165881.1 Accepted alive Link to Nucleotide Sequence:NM_001172410.2Link to Protein Sequence:NP_001165881.1Re-query CCDS DB by Nucleotide ID:NM_001172410Re-query CCDS DB by Protein ID:NP_001165881Link to BLAST:NP_001165881.1
Original member Current member NCBI NM_001385653.1 NP_001372582.1 Accepted alive Link to Nucleotide Sequence:NM_001385653.1Link to Protein Sequence:NP_001372582.1Re-query CCDS DB by Nucleotide ID:NM_001385653Re-query CCDS DB by Protein ID:NP_001372582Link to BLAST:NP_001372582.1
Original member Current member NCBI NM_001385654.1 NP_001372583.1 Accepted alive Link to Nucleotide Sequence:NM_001385654.1Link to Protein Sequence:NP_001372583.1Re-query CCDS DB by Nucleotide ID:NM_001385654Re-query CCDS DB by Protein ID:NP_001372583Link to BLAST:NP_001372583.1
Original member Current member NCBI NM_001385655.1 NP_001372584.1 Accepted alive Link to Nucleotide Sequence:NM_001385655.1Link to Protein Sequence:NP_001372584.1Re-query CCDS DB by Nucleotide ID:NM_001385655Re-query CCDS DB by Protein ID:NP_001372584Link to BLAST:NP_001372584.1
Original member Current member NCBI NM_003018.4 NP_003009.2 Accepted alive Link to Nucleotide Sequence:NM_003018.4Link to Protein Sequence:NP_003009.2Re-query CCDS DB by Nucleotide ID:NM_003018Re-query CCDS DB by Protein ID:NP_003009Link to BLAST:NP_003009.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165881.1 197 P11686-1 197 100% 0 0
NP_001372582.1 197 P11686-1 197 100% 0 0
NP_001372583.1 197 P11686-1 197 100% 0 0
NP_001372584.1 197 P11686-1 197 100% 0 0
NP_003009.2 197 P11686-1 197 100% 0 0

Chromosomal Locations for CCDS 43722.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22161829 22161870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22162574 22162732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22163080 22163202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22163436 22163546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22163883 22164041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGGATGTGGGCAGCAAAGAGGTCCTGATGGAGAGCCCGCCGGACTACTCCGCAGCTCCCCGGGGCCGAT
TTGGCATTCCCTGCTGCCCAGTGCACCTGAAACGCCTTCTTATCGTGGTGGTGGTGGTGGTCCTCATCGT
CGTGGTGATTGTGGGAGCCCTGCTCATGGGTCTCCACATGAGCCAGAAACACACGGAGATGGTTCTGGAG
ATGAGCATTGGGGCGCCGGAAGCCCAGCAACGCCTGGCCCTGAGTGAGCACCTGGTTACCACTGCCACCT
TCTCCATCGGCTCCACTGGCCTCGTGGTGTATGACTACCAGCAGCTGCTGATCGCCTACAAGCCAGCCCC
TGGCACCTGCTGCTACATCATGAAGATAGCTCCAGAGAGCATCCCCAGTCTTGAGGCTCTCACTAGAAAA
GTCCACAACTTCCAGATGGAATGCTCTCTGCAGGCCAAGCCCGCAGTGCCTACGTCTAAGCTGGGCCAGG
CAGAGGGGCGAGATGCAGGCTCAGCACCCTCCGGAGGGGACCCGGCCTTCCTGGGCATGGCCGTGAGCAC
CCTGTGTGGCGAGGTGCCGCTCTACTACATCTAG

Translation (197 aa):
MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHMSQKHTEMVLE
MSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALTRK
VHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAFLGMAVSTLCGEVPLYYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH