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Report for CCDS44299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44299.1 Public Homo sapiens 1 SOX13 24 110 108 CCDS HistoryNCBI Gene:9580Re-query CCDS DB by CCDS ID:44299.1Re-query CCDS DB by GeneID:9580See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44299.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367204.6 ENSP00000356172.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367204.6Link to Ensembl Protein Viewer:ENSP00000356172.1Re-query CCDS DB by Nucleotide ID:ENST00000367204Re-query CCDS DB by Protein ID:ENSP00000356172
Original member Current member EBI ENST00000618875.4 ENSP00000478239.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618875.4Link to Ensembl Protein Viewer:ENSP00000478239.1Re-query CCDS DB by Nucleotide ID:ENST00000618875Re-query CCDS DB by Protein ID:ENSP00000478239
Original member Current member NCBI NM_005686.3 NP_005677.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005686.3Link to Protein Sequence:NP_005677.2Re-query CCDS DB by Nucleotide ID:NM_005686Re-query CCDS DB by Protein ID:NP_005677Link to BLAST:NP_005677.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005677.2 622 Q9UN79 622 100% 0 0

Chromosomal Locations for CCDS 44299.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 204112916 204113134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204114321 204114432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204114519 204114605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204116507 204116679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204117122 204117190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204117593 204117707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204121900 204121985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204122237 204122399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204122854 204122963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204123112 204123208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204123661 204123804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204124641 204124857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 204125858 204126134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGTCCATGAGGAGCCCCATCTCTGCCCAGCTGGCCCTGGATGGCGTTGGCACCATGGTGAACTGCACCA
TCAAGTCAGAGGAGAAGAAAGAGCCTTGCCACGAGGCCCCCCAGGGCTCAGCCACTGCCGCTGAACCTCA
GCCTGGAGACCCAGCCCGGGCCTCCCAGGATAGTGCTGACCCCCAAGCTCCAGCCCAGGGGAATTTCAGG
GGCTCCTGGGACTGTAGCTCTCCAGAGGGTAATGGGTCCCCAGAACCCAAGAGACCAGGAGTGTCGGAGG
CTGCCTCTGGAAGCCAGGAGAAGCTGGACTTCAACCGAAATTTGAAAGAAGTGGTGCCAGCCATAGAGAA
GCTGTTGTCCAGTGACTGGAAGGAGAGGTTTCTAGGAAGGAACTCTATGGAAGCCAAAGATGTCAAAGGG
ACCCAAGAGAGCCTAGCAGAGAAGGAGCTCCAGCTTCTGGTCATGATTCACCAGCTGTCCACCCTGCGGG
ACCAGCTCCTGACAGCCCACTCGGAGCAGAAGAACATGGCTGCCATGCTGTTTGAGAAGCAGCAGCAGCA
GATGGAGCTTGCCCGGCAGCAGCAGGAGCAGATTGCAAAGCAGCAGCAGCAGCTGATTCAGCAGCAGCAT
AAGATCAACCTCCTTCAGCAGCAGATCCAGCAGGTTAACATGCCTTATGTCATGATCCCAGCCTTCCCCC
CAAGCCACCAACCTCTGCCTGTCACCCCTGACTCCCAGCTGGCCTTACCCATTCAGCCCATTCCCTGCAA
ACCAGTGGAGTATCCGCTGCAGCTGCTGCACAGCCCCCCTGCCCCAGTGGTGAAGAGGCCTGGGGCCATG
GCCACCCACCACCCCCTGCAGGAGCCCTCCCAGCCCCTGAACCTCACAGCCAAGCCCAAGGCCCCCGAGC
TGCCCAACACCTCCAGCTCCCCAAGCCTGAAGATGAGCAGCTGTGTGCCCCGCCCCCCCAGCCATGGAGG
CCCCACGCGGGACCTGCAGTCCAGCCCCCCGAGCCTGCCTCTGGGCTTCCTTGGTGAAGGGGACGCTGTC
ACCAAAGCCATCCAGGATGCTCGGCAGCTGCTGCACAGCCACAGTGGGGCCTTGGATGGCTCCCCCAACA
CCCCCTTCCGTAAGGACCTCATCAGCCTGGACTCATCCCCAGCCAAGGAGCGGCTGGAGGACGGCTGTGT
GCACCCACTGGAGGAAGCCATGCTGAGCTGCGACATGGATGGCTCCCGCCACTTCCCCGAGTCCCGAAAC
AGCAGCCACATCAAGAGGCCCATGAACGCCTTCATGGTGTGGGCCAAGGATGAGCGGAGGAAGATCCTGC
AAGCCTTCCCAGACATGCACAACTCCAGCATCAGCAAGATCCTTGGATCTCGCTGGAAGTCCATGACCAA
CCAGGAGAAGCAGCCCTACTATGAGGAACAGGCGCGGCTGAGCCGGCAGCACCTGGAGAAGTATCCTGAC
TACAAGTACAAGCCGCGGCCCAAGCGCACCTGCATCGTGGAGGGCAAGCGGCTGCGCGTGGGAGAGTACA
AGGCCCTGATGAGGACCCGGCGTCAGGATGCCCGCCAGAGCTACGTGATCCCCCCGCAGGCTGGCCAGGT
GCAGATGAGCTCCTCAGATGTCCTGTACCCTCGGGCAGCAGGCATGCCGCTGGCACAGCCACTGGTGGAG
CACTATGTCCCTCGTAGCCTGGACCCCAACATGCCTGTGATCGTCAACACCTGCAGCCTCAGAGAGGAGG
GTGAGGGCACAGATGACAGGCACTCGGTGGCTGATGGCGAGATGTACCGGTACAGCGAGGACGAGGACTC
GGAGGGCGAAGAGAAGAGCGATGGGGAGTTGGTGGTGCTCACAGACTGA

Translation (622 aa):
MSMRSPISAQLALDGVGTMVNCTIKSEEKKEPCHEAPQGSATAAEPQPGDPARASQDSADPQAPAQGNFR
GSWDCSSPEGNGSPEPKRPGVSEAASGSQEKLDFNRNLKEVVPAIEKLLSSDWKERFLGRNSMEAKDVKG
TQESLAEKELQLLVMIHQLSTLRDQLLTAHSEQKNMAAMLFEKQQQQMELARQQQEQIAKQQQQLIQQQH
KINLLQQQIQQVNMPYVMIPAFPPSHQPLPVTPDSQLALPIQPIPCKPVEYPLQLLHSPPAPVVKRPGAM
ATHHPLQEPSQPLNLTAKPKAPELPNTSSSPSLKMSSCVPRPPSHGGPTRDLQSSPPSLPLGFLGEGDAV
TKAIQDARQLLHSHSGALDGSPNTPFRKDLISLDSSPAKERLEDGCVHPLEEAMLSCDMDGSRHFPESRN
SSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPD
YKYKPRPKRTCIVEGKRLRVGEYKALMRTRRQDARQSYVIPPQAGQVQMSSSDVLYPRAAGMPLAQPLVE
HYVPRSLDPNMPVIVNTCSLREEGEGTDDRHSVADGEMYRYSEDEDSEGEEKSDGELVVLTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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