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Report for CCDS44616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44616.1 Public Homo sapiens 11 MS4A6A 24 110 108 CCDS HistoryNCBI Gene:64231Re-query CCDS DB by CCDS ID:44616.1Re-query CCDS DB by GeneID:64231See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44616.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420732.6 ENSP00000392921.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420732.6Link to Ensembl Protein Viewer:ENSP00000392921.2Re-query CCDS DB by Nucleotide ID:ENST00000420732Re-query CCDS DB by Protein ID:ENSP00000392921
Original member Current member NCBI NM_152851.2 NP_690590.1 Accepted alive Link to Nucleotide Sequence:NM_152851.2Link to Protein Sequence:NP_690590.1Re-query CCDS DB by Nucleotide ID:NM_152851Re-query CCDS DB by Protein ID:NP_690590Link to BLAST:NP_690590.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690590.1 178 Q9H2W1-3 178 100% 0 0

Chromosomal Locations for CCDS 44616.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60173038 60173129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60175506 60175611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60178260 60178316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60179831 60179965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60181581 60181727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGACATCACAACCTGTTCCCAATGAGACCATCATAGTGCTCCCATCAAATGTCATCAACTTCTCCCAAG
CA
GAGAAACCCGAACCCACCAACCAGGGGCAGGATAGCCTGAAGAAACATCTACACGCAGAAATCAAAGT
T
ATTGGGACTATCCAGATCTTGTGTGGCATGATGGTATTGAGCTTGGGGATCATTTTGGCATCTGCTTCC
TTC
TCTCCAAATTTTACCCAAGTGACTTCTACACTGTTGAACTCTGCTTACCCATTCATAGGACCCTTTT
TT
TTTATCATCTCTGGCTCTCTATCAATCGCCACAGAGAAAAGGTTAACCAAGCTTTTGGTGCATAGCAG
C
CTGGTTGGAAGCATTCTGAGTGCTCTGTCTGCCCTGGTGGGTTTCATTATCCTGTCTGTCAAACAGGCC
ACC
TTAAATCCTGCCTCACTGCAGTGGAACTCTCTCTCTGATGCTGATTTGCACTCTGCTGGAATTCTGC
CT
AGCTGTGCTCACTGCTGTGCTGCGGTGGAAACAGGCTTACTCTGA


Translation (178 aa):
MTSQPVPNETIIVLPSNVINFSQAEKPEPTNQGQDSLKKHLHAEIKVIGTIQILCGMMVLSLGIILASAS
F
SPNFTQVTSTLLNSAYPFIGPFF
FIISGSLSIATEKRLTKLLVHSSLVGSILSALSALVGFIILSVKQA
T
LNPASLQ
WNSLSDADLHSAGILPSCAHCCAAVETGLL



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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