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Report for CCDS44852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44852.1 Public Homo sapiens 12 SMCO2 24 110 108 CCDS HistoryNCBI Gene:341346Re-query CCDS DB by CCDS ID:44852.1Re-query CCDS DB by GeneID:341346See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535986.2 ENSP00000441688.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000535986.2Link to Ensembl Protein Viewer:ENSP00000441688.1Re-query CCDS DB by Nucleotide ID:ENST00000535986Re-query CCDS DB by Protein ID:ENSP00000441688
Original member Current member NCBI NM_001145010.3 NP_001138482.1 Accepted alive Link to Nucleotide Sequence:NM_001145010.3Link to Protein Sequence:NP_001138482.1Re-query CCDS DB by Nucleotide ID:NM_001145010Re-query CCDS DB by Protein ID:NP_001138482Link to BLAST:NP_001138482.1
Original member Current member NCBI NM_001395208.2 NP_001382137.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001395208.2Link to Protein Sequence:NP_001382137.1Re-query CCDS DB by Nucleotide ID:NM_001395208Re-query CCDS DB by Protein ID:NP_001382137Link to BLAST:NP_001382137.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138482.1 343 A6NFE2 343 100% 0 0
NP_001382137.1 343 A6NFE2 343 100% 0 0

Chromosomal Locations for CCDS 44852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 27470632 27470765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27472776 27472875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27474786 27474913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27475582 27475731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27488460 27488547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27494300 27494356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27495680 27495855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27501923 27502121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGCTCTCACGCCCACAAACCTAAATAACAAAATGTCTCTGCAGATGAAGATGGACTGCCAGGAACAAC
AGCTGACTAAGAAAAACAATGGCTTTTTCCAAAAGCTCAATGTGACTGAAGGTGCAATGCAGGATTTGCT
AAAGGAAATTATCAAAGTGGACCACATCTTAGACAGATCGGATGATGAGGATGACATTTCCTCCGAAAAC
CCTCAAACTGACTTCCTTCACAAGGGTATGTTGGAGCTAGAGGCTGAGCATGACCAGGACCTGAGTAAAC
AGGATAAGCAAGAAACAGATGTTGATGAGGACCCTCAAGCGTCTACATCTCTGCAGTTTTCAAAGAAGAA
CCTCCTTGAACTGTGTCTGAAGGGCATGTTCCTCAAGCTAAACTACTGGAACACAAAGATAGGTCTCCAG
GTGAAAGAACTTGGAGCTGATTACATAGACGGAACGGAGAAAATTGACAATATTATTAAAAAAATAAATG
TAACAGAAAACACAGTGAAGAGCTTATTAAAAGACATGCTGACCCTGAAGGGTCAAATTGAAAAGCTGGA
GGACCGGGGCCTTGACCTTGATCAAGGGACAAGCACTGAGGTGAATACTTGTAATGAAGTTTATGAATTA
AAGAAGAAAGTCATAGAAAGGCTGGAGGACCTTTGCAAGAATGTGGAACTGCTGAGTGCAAAGCTAAGGA
TGTATCAAATGGAGGCAGAGGACACTGACTCTCACAGTTCTGAGGAAATAGATACGGAAGAGATGGAGGC
CCTGCTTCCTCAGGCCCCAGCATCCTTTTTAGTGCAGAAGTCTCCTCCCCGCAATACAGCATGGAAACGT
GCACTGAGGATTTTCATCATGTTTGATGTCCTCACCGTCACTGGACTTTTATGTTACATACTATTTTTTG
GTGCTACATTTCTCTTTGAAAGGGTGCTTCTGAGAATGCTTGGGTGCCGCACCACATGGGACCTACGGGA
GATGAGAGAGCCTTTCTTGAATTTGGAAGTGGAAGCCTTGTTACCCTCCTAA

Translation (343 aa):
MALTPTNLNNKMSLQMKMDCQEQQLTKKNNGFFQKLNVTEGAMQDLLKEIIKVDHILDRSDDEDDISSEN
PQTDFLHKGMLELEAEHDQDLSKQDKQETDVDEDPQASTSLQFSKKNLLELCLKGMFLKLNYWNTKIGLQ
VKELGADYIDGTEKIDNIIKKINVTENTVKSLLKDMLTLKGQIEKLEDRGLDLDQGTSTEVNTCNEVYEL
KKKVIERLEDLCKNVELLSAKLRMYQMEAEDTDSHSSEEIDTEEMEALLPQAPASFLVQKSPPRNTAWKR
ALRIFIMFDVLTVTGLLCYILFFGATFLFERVLLRMLGCRTTWDLREMREPFLNLEVEALLPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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