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Report for CCDS46012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46012.1 Public Homo sapiens 19 BABAM1 24 110 108 CCDS HistoryNCBI Gene:29086Re-query CCDS DB by CCDS ID:46012.1Re-query CCDS DB by GeneID:29086See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46012.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359435.8 ENSP00000352408.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359435.8Link to Ensembl Protein Viewer:ENSP00000352408.3Re-query CCDS DB by Nucleotide ID:ENST00000359435Re-query CCDS DB by Protein ID:ENSP00000352408
Original member Current member EBI ENST00000601043.5 ENSP00000470920.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000601043.5Link to Ensembl Protein Viewer:ENSP00000470920.1Re-query CCDS DB by Nucleotide ID:ENST00000601043Re-query CCDS DB by Protein ID:ENSP00000470920
Original member Current member EBI ENST00000598188.6 ENSP00000471605.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000598188.6Link to Ensembl Protein Viewer:ENSP00000471605.1Re-query CCDS DB by Nucleotide ID:ENST00000598188Re-query CCDS DB by Protein ID:ENSP00000471605
Original member Current member NCBI NM_001033549.3 NP_001028721.1 Accepted alive Link to Nucleotide Sequence:NM_001033549.3Link to Protein Sequence:NP_001028721.1Re-query CCDS DB by Nucleotide ID:NM_001033549Re-query CCDS DB by Protein ID:NP_001028721Link to BLAST:NP_001028721.1
Original member Current member NCBI NM_001288756.2 NP_001275685.1 Accepted alive Link to Nucleotide Sequence:NM_001288756.2Link to Protein Sequence:NP_001275685.1Re-query CCDS DB by Nucleotide ID:NM_001288756Re-query CCDS DB by Protein ID:NP_001275685Link to BLAST:NP_001275685.1
Original member Current member NCBI NM_014173.4 NP_054892.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014173.4Link to Protein Sequence:NP_054892.2Re-query CCDS DB by Nucleotide ID:NM_014173Re-query CCDS DB by Protein ID:NP_054892Link to BLAST:NP_054892.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028721.1 329 Q9NWV8-1 329 100% 0 0
NP_001275685.1 329 Q9NWV8-1 329 100% 0 0
NP_054892.2 329 Q9NWV8-1 329 100% 0 0

Chromosomal Locations for CCDS 46012.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 17268807 17269091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17271597 17271655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17273904 17274024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17274107 17274185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17275801 17275825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17276495 17276624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17276823 17276909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17278845 17279048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGAAGTGGCAGAGCCCAGCAGCCCCACTGAAGAGGAGGAGGAGGAAGAGGAGCACTCGGCAGAGCCTC
GGCCCCGCACTCGCTCCAATCCTGAAGGGGCTGAGGACCGGGCAGTAGGGGCACAGGCCAGCGTGGGCAG
CCGCAGCGAGGGTGAGGGTGAGGCCGCCAGTGCTGATGATGGGAGCCTCAACACTTCAGGAGCCGGCCCT
AAGTCCTGGCAGGTGCCCCCGCCAGCCCCTGAGGTCCAAATTCGGACACCAAGGGTCAACTGTCCAGAGA
AAGTGATTATCTGCCTGGACCTGTCAGAGGAAATGTCACTGCCAAAGCTGGAGTCGTTCAACGGCTCCAA
AACCAACGCCCTCAATGTCTCCCAGAAGATGATTGAGATGTTCGTGCGGACAAAACACAAGATCGACAAA
AGCCACGAGTTTGCACTGGTGGTGGTGAACGATGACACGGCCTGGCTGTCTGGCCTGACCTCCGACCCCC
GCGAGCTCTGTAGCTGCCTCTATGATCTGGAGACGGCCTCCTGTTCCACCTTCAATCTGGAAGGACTTTT
CAGCCTCATCCAGCAGAAAACTGAGCTTCCGGTCACAGAGAACGTGCAGACGATTCCCCCGCCATATGTG
GTCCGCACCATCCTTGTCTACAGCCGTCCACCTTGCCAGCCCCAGTTCTCCTTGACGGAGCCCATGAAGA
AAATGTTCCAGTGCCCATATTTCTTCTTTGACGTTGTTTACATCCACAATGGCACTGAGGAGAAGGAGGA
GGAGATGAGTTGGAAGGATATGTTTGCCTTCATGGGCAGCCTGGATACCAAGGGTACCAGCTACAAGTAT
GAGGTGGCACTGGCTGGGCCAGCCCTGGAGTTGCACAACTGCATGGCGAAACTGTTGGCCCACCCCCTGC
AGCGGCCTTGCCAGAGCCATGCTTCCTACAGCCTGCTGGAGGAGGAGGATGAAGCCATTGAGGTTGAGGC
CACTGTCTGA

Translation (329 aa):
MEVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDGSLNTSGAGP
KSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNALNVSQKMIEMFVRTKHKIDK
SHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETASCSTFNLEGLFSLIQQKTELPVTENVQTIPPPYV
VRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDVVYIHNGTEEKEEEMSWKDMFAFMGSLDTKGTSYKY
EVALAGPALELHNCMAKLLAHPLQRPCQSHASYSLLEEEDEAIEVEATV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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