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Report for CCDS46018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46018.1 Public Homo sapiens 19 IQCN 24 110 108 CCDS HistoryNCBI Gene:80726Re-query CCDS DB by CCDS ID:46018.1Re-query CCDS DB by GeneID:80726See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46018.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000600359.7 ENSP00000472912.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000600359.7Link to Ensembl Protein Viewer:ENSP00000472912.1Re-query CCDS DB by Nucleotide ID:ENST00000600359Re-query CCDS DB by Protein ID:ENSP00000472912
Original member Current member NCBI NM_001145305.2 NP_001138777.1 Accepted alive Link to Nucleotide Sequence:NM_001145305.2Link to Protein Sequence:NP_001138777.1Re-query CCDS DB by Nucleotide ID:NM_001145305Re-query CCDS DB by Protein ID:NP_001138777Link to BLAST:NP_001138777.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138777.1 1134 Q9H0B3-5 1134 100% 0 0

Chromosomal Locations for CCDS 46018.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18257180 18258106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18264924 18267401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3405 nt):
ATGGAGAAAGCGCCTCCACAGCCCCAGCACGAGGGCCTCAAGTCCAAGGAGCATCTTCCGCAACAGCCTG
CCGAAGGCAAGACGGCGTCCCGCCGCGTCCCACGCCTCCGGGCTGTGGTCGAGAGCCAGGCCTTCAAGAA
CATCCTGGTAGACGAGATGGACATGATGCACGCCCGTGCAGCCACGCTCATCCAAGCCAACTGGAGGGGC
TATTGGCTCCGGCAGAAGCTGATTTCCCAGATGATGGCGGCCAAGGCCATCCAGGAGGCCTGGCGGCGCT
TCAACAAGAGACACATCCTTCACTCCAGCAAGTCGTTGGTAAAGAAAACGAGGGCGGAGGAGGGGGACAT
ACCTTATCACGCCCCACAGCAGGTGCGCTTCCAGCATCCGGAAGAGAACCGCCTTCTGTCCCCGCCCATC
ATGGTGAACAAGGAGACCCAGTTCCCTTCCTGTGACAATCTGGTCCTCTGCAGACCCCAGTCGTCCCCCC
TCCTGCAGCCCCCAGCAGCTCAGGGTACCCCAGAGCCCTGTGTGCAGGGTCCTCATGCTGCCAGAGTCCG
GGGGCTGGCCTTCCTGCCACACCAGACGGTCACCATCAGATTTCCCTGCCCAGTGAGTCTGGACGCAAAA
TGCCAGCCATGCCTGCTGACCAGAACCATCAGAAGCACCTGCCTCGTCCACATAGAGGGTGACTCAGTGA
AGACCAAACGTGTAAGTGCCCGGACCAACAAAGCCAGGGCTCCGGAGACACCATTGTCCAGAAGGTATGA
CCAGGCAGTTACGAGACCATCCAGAGCCCAAACCCAGGGCCCTGTGAAAGCAGAGACCCCCAAAGCCCCC
TTCCAGATATGTCCAGGGCCCATGATCACCAAGACTCTACTCCAGACATATCCAGTGGTCTCCGTGACCC
TGCCACAGACATATCCAGCGTCCACGATGACCACCACCCCACCCAAGACTAGCCCAGTTCCCAAAGTAAC
AATAATCAAGACCCCAGCCCAGATGTATCCGGGGCCCACAGTGACCAAAACTGCACCTCACACATGCCCC
ATGCCCACAATGACCAAGATCCAGGTACACCCCACAGCCTCCAGAACTGGCACCCCACGGCAGACATGCC
CTGCGACCATCACGGCAAAGAACCGACCTCAGGTTTCCCTTCTGGCTTCCATCATGAAGAGCCTGCCCCA
GGTATGCCCGGGGCCTGCGATGGCAAAGACCCCACCCCAGATGCACCCGGTCACCACCCCAGCCAAAAAC
CCATTGCAAACATGTCTGTCAGCCACAATGTCCAAGACTTCATCCCAGAGGAGCCCAGTTGGGGTGACCA
AGCCCTCACCCCAGACCCGCCTGCCAGCCATGATAACCAAGACCCCAGCCCAGTTACGCTCGGTGGCCAC
CATCCTCAAGACTCTGTGTCTGGCCTCTCCAACAGTGGCAAATGTCAAGGCTCCACCCCAAGTGGCGGTA
GCAGCCGGAACTCCCAACACCTCAGGCTCCATCCATGAGAACCCACCCAAGGCCAAGGCCACCGTGAATG
TGAAGCAGGCTGCAAAGGTGGTGAAAGCCTCATCCCCCTCCTATTTGGCTGAGGGGAAGATCAGGTGCCT
GGCTCAACCACATCCGGGAACTGGGGTCCCCAGGGCTGCAGCTGAGCTTCCTTTGGAAGCCGAGAAAATC
AAGACTGGCACCCAGAAACAGGCGAAAACAGACATGGCATTTAAGACCAGTGTGGCAGTGGAAATGGCTG
GGGCTCCATCCTGGACAAAAGTTGCTGAGGAAGGGGACAAGCCACCTCACGTGTATGTGCCTGTAGACAT
GGCTGTCACCCTGCCCCGGGGACAGCTGGCTGCCCCACTGACCAATGCCTCATCCCAGAGACATCCACCC
TGCCTGTCCCAGAGACCACTGGCCGCCCCGCTGACCAAGGCCTCATCTCAGGGACATCTGCCCACTGAGC
TGACCAAGACCCCATCCCTGGCCCATCTGGACACCTGTCTGAGCAAGATGCATTCCCAGACACATCTGGC
CACAGGTGCCGTGAAGGTCCAGTCCCAAGCGCCTCTAGCCACCTGTCTGACCAAGACGCAGTCCCGGGGG
CAGCCGATCACAGACATAACCACGTGCCTCATCCCAGCGCACCAGGCTGCTGATCTCAGCAGCAACACCC
ACTCCCAGGTGCTCCTAACAGGGTCCAAGGTGTCCAACCACGCCTGCCAGCGCCTCGGTGGCCTCAGCGC
CCCACCCTGGGCCAAGCCAGAGGACAGACAGACCCAGCCACAGCCCCACGGACACGTGCCGGGGAAGACC
ACTCAGGGGGGACCATGCCCGGCAGCCTGTGAGGTCCAGGGTATGCTGGTGCCGCCGATGGCACCCACCG
GCCATTCCACATGCAACGTTGAGTCCTGGGGAGACAACGGAGCCACACGTGCCCAGCCATCAATGCCCGG
CCAGGCGGTGCCCTGCCAGGAGGACACGGGCCCCGCGGACGCTGGTGTGGTTGGTGGCCAATCGTGGAAC
CGCGCATGGGAGCCAGCCAGGGGTGCTGCGTCCTGGGACACCTGGCGCAACAAGGCGGTGGTGCCTCCCA
GGCGGTCCGGGGAGCCAATGGTGTCCATGCAGGCTGCAGAGGAGATCCGCATCCTCGCAGTGATCACTAT
CCAGGCGGGCGTCCGTGGCTACCTGGCGCGTCGCAGGATCCGGCTGTGGCACCGGGGGGCCATGGTCATC
CAAGCTACTTGGCGCGGCTACCGTGTGCGGCGGAACCTGGCACACCTCTGCAGAGCCACCACGACCATCC
AGTCTGCCTGGCGCGGCTACAGCACCCGCCGGGACCAAGCCCGGCACTGGCAGATGCTCCACCCCGTCAC
GTGGGTGGAGCTGGGCAGCCGGGCCGGGGTCATGTCTGACCGAAGCTGGTTCCAGGATGGCAGAGCCAGG
ACAGTATCTGACCATCGCTGCTTCCAGTCCTGCCAGGCACACGCTTGCAGCGTCTGCCACTCCCTGAGCT
CCAGGATCGGGAGCCCGCCCAGCGTGGTGATGCTAGTGGGCTCCAGCCCTCGCACCTGTCATACCTGTGG
ACGCACACAGCCCACCCGTGTGGTGCAGGGCATGGGCCAGGGCACTGAGGGCCCCGGGGCAGTGTCTTGG
GCCTCCGCCTACCAGCTGGCTGCCCTGAGTCCCAGGCAGCCGCATCGCCAGGACAAAGCGGCCACAGCCA
TCCAGTCCGCCTGGAGGGGCTTTAAGATCCGCCAGCAGATGAGGCAGCAGCAAATGGCAGCGAAGATAGT
TCAAGCCACCTGGCGAGGCCACCATACCCGGAGCTGTCTGAAGAACACAGAGGCGCTCTTGGGACCAGCA
GACCCCTCGGCCAGCTCACGGCACATGCATTGGCCTGGCATCTAG

Translation (1134 aa):
MEKAPPQPQHEGLKSKEHLPQQPAEGKTASRRVPRLRAVVESQAFKNILVDEMDMMHARAATLIQANWRG
YWLRQKLISQMMAAKAIQEAWRRFNKRHILHSSKSLVKKTRAEEGDIPYHAPQQVRFQHPEENRLLSPPI
MVNKETQFPSCDNLVLCRPQSSPLLQPPAAQGTPEPCVQGPHAARVRGLAFLPHQTVTIRFPCPVSLDAK
CQPCLLTRTIRSTCLVHIEGDSVKTKRVSARTNKARAPETPLSRRYDQAVTRPSRAQTQGPVKAETPKAP
FQICPGPMITKTLLQTYPVVSVTLPQTYPASTMTTTPPKTSPVPKVTIIKTPAQMYPGPTVTKTAPHTCP
MPTMTKIQVHPTASRTGTPRQTCPATITAKNRPQVSLLASIMKSLPQVCPGPAMAKTPPQMHPVTTPAKN
PLQTCLSATMSKTSSQRSPVGVTKPSPQTRLPAMITKTPAQLRSVATILKTLCLASPTVANVKAPPQVAV
AAGTPNTSGSIHENPPKAKATVNVKQAAKVVKASSPSYLAEGKIRCLAQPHPGTGVPRAAAELPLEAEKI
KTGTQKQAKTDMAFKTSVAVEMAGAPSWTKVAEEGDKPPHVYVPVDMAVTLPRGQLAAPLTNASSQRHPP
CLSQRPLAAPLTKASSQGHLPTELTKTPSLAHLDTCLSKMHSQTHLATGAVKVQSQAPLATCLTKTQSRG
QPITDITTCLIPAHQAADLSSNTHSQVLLTGSKVSNHACQRLGGLSAPPWAKPEDRQTQPQPHGHVPGKT
TQGGPCPAACEVQGMLVPPMAPTGHSTCNVESWGDNGATRAQPSMPGQAVPCQEDTGPADAGVVGGQSWN
RAWEPARGAASWDTWRNKAVVPPRRSGEPMVSMQAAEEIRILAVITIQAGVRGYLARRRIRLWHRGAMVI
QATWRGYRVRRNLAHLCRATTTIQSAWRGYSTRRDQARHWQMLHPVTWVELGSRAGVMSDRSWFQDGRAR
TVSDHRCFQSCQAHACSVCHSLSSRIGSPPSVVMLVGSSPRTCHTCGRTQPTRVVQGMGQGTEGPGAVSW
ASAYQLAALSPRQPHRQDKAATAIQSAWRGFKIRQQMRQQQMAAKIVQATWRGHHTRSCLKNTEALLGPA
DPSASSRHMHWPGI


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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