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Report for CCDS46290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46290.1 Public Homo sapiens 2 CCDC85A 24 110 108 CCDS HistoryNCBI Gene:114800Re-query CCDS DB by CCDS ID:46290.1Re-query CCDS DB by GeneID:114800See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46290.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407595.3 ENSP00000384040.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000407595.3Link to Ensembl Protein Viewer:ENSP00000384040.2Re-query CCDS DB by Nucleotide ID:ENST00000407595Re-query CCDS DB by Protein ID:ENSP00000384040
Original member Current member NCBI NM_001080433.2 NP_001073902.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080433.2Link to Protein Sequence:NP_001073902.1Re-query CCDS DB by Nucleotide ID:NM_001080433Re-query CCDS DB by Protein ID:NP_001073902Link to BLAST:NP_001073902.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073902.1 553 Q96PX6 553 100% 0 0

Chromosomal Locations for CCDS 46290.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 56184625 56184900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 56192477 56193440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 56342879 56342955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 56372344 56372478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 56375816 56375935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 56384266 56384355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGTCGAAGGCGGCCGGAGGCGCGGCGGCGGCTGCGGCGGCGGCGGAAAGTTGTTCCCCAGCCCCGGCCG
GCTCGTCCGCGGCCCCGCCCGCGCCGGTGGAGGACCTGTCCAAAGTGTCGGACGAGGAGCTGCTGCAGTG
GAGCAAGGAGGAGCTGATCCGCAGCCTGCGGCGCGCCGAGGCGGAGAAGGTGAGCGCGATGCTGGACCAC
AGCAACCTCATCCGCGAGGTGAACCGCCGCCTGCAGCTGCACCTCGGCGAGATCCGCGGCCTCAAGGATA
TCAACCAGAAACTCCAGGAAGACAACCAGGAACTGAGGGACCTCTGCTGTTTCCTGGATGATGACCGGCA
GAAAGGCAAGAGGGTGTCTCGGGAGTGGCAGAGACTGGGTCGCTACACTGCCGGGGTGATGCACAAGGAA
GTGGCCTTATACCTGCAGAAGCTGAAAGACCTGGAGGTGAAGCAGGAGGAAGTGGTGAAGGAGAACATGG
AGCTCAAGGAGCTCTGTGTGCTACTAGATGAGGAGAAGGGTGCAGGCTGCGCAGGCAGCCGCTGCTCCAT
CGACAGCCAGGCCAGCCTGTGCCAACTCACAGCCTCCACCGCACCCTACGTGCGGGATGTGGGTGACGGC
AGCAGCACCTCCAGCACTGGCAGCACTGACAGCCCGGACCACCACAAGCACCACGCGAGCAGTGGCAGCC
CGGAGCACCTGCAGAAGCCCCGGAGCGAGGGCAGCCCGGAGCACTCCAAGCACAGGAGCGCCAGCCCCGA
GCATCCACAGAAACCCAGAGCCTGTGGAACCCCAGATCGCCCCAAAGCACTCAAAGGACCTAGCCCGGAG
CACCACAAACCCTTGTGCAAGGGCAGCCCCGAACAGCAAAGGCACCCGCATCCAGGGAGCAGCCCCGAAA
CGCTGCCCAAGCACGTGCTGAGTGGGAGCCCGGAACACTTCCAGAAGCACCGGTCAGGGAGCAGCCCTGA
ACACGCCAGGCACAGTGGAGGGAGCCCGGAGCATCTTCAGAAACACGCTCTTGGGGGGAGCCTAGAGCAT
CTCCCCAGAGCCAGGGGCACCAGCCCGGAGCACCTCAAACAACATTATGGAGGGAGCCCTGATCACAAAC
ACGGAGGAGGCAGTGGAGGAAGTGGAGGCAGCGGCGGAGGCAGCAGGGAGGGCACCCTCAGACGGCAGGC
ACAGGAGGACGGGTCACCCCATCACCGGAATGTCTACAGTGGCATGAACGAATCAACCTTGTCCTATGTT
AGGCAGCTGGAGGCAAGAGTAAGACAGCTGGAGGAAGAAAATCGCATGCTGCCCCAGGCCAGCCAGAATA
GAAGGCAACCTCCAACTAGAAACAGCTCAAATATGGAGAAAGGCTGGGGGTCCAGAGCCCGGCGGGTCTT
GCAGTGGTGGCAAGGGTGCCGAGGAATAGGACGATGCCTGCCTACTCTCCCGGGTTCTTTTAGGTTGTCA
TCAGGGGCTGATGGGAGTAACAGTTCACCCAACTCTGCAGCTAGCTTCAGTGGACATGCCACACCTTCCC
AGCAGCCTGAACCTGTGGTACATTCTCTTAAGGTTGTGTGGAGGAAACTTGGAGATGCTGCAGGTTCGTG
TCCTGGAATTAGGCAACATTTGTCAGGAAACCAGTACAAAGGACCAATGTGA

Translation (553 aa):
MSKAAGGAAAAAAAAESCSPAPAGSSAAPPAPVEDLSKVSDEELLQWSKEELIRSLRRAEAEKVSAMLDH
SNLIREVNRRLQLHLGEIRGLKDINQKLQEDNQELRDLCCFLDDDRQKGKRVSREWQRLGRYTAGVMHKE
VALYLQKLKDLEVKQEEVVKENMELKELCVLLDEEKGAGCAGSRCSIDSQASLCQLTASTAPYVRDVGDG
SSTSSTGSTDSPDHHKHHASSGSPEHLQKPRSEGSPEHSKHRSASPEHPQKPRACGTPDRPKALKGPSPE
HHKPLCKGSPEQQRHPHPGSSPETLPKHVLSGSPEHFQKHRSGSSPEHARHSGGSPEHLQKHALGGSLEH
LPRARGTSPEHLKQHYGGSPDHKHGGGSGGSGGSGGGSREGTLRRQAQEDGSPHHRNVYSGMNESTLSYV
RQLEARVRQLEEENRMLPQASQNRRQPPTRNSSNMEKGWGSRARRVLQWWQGCRGIGRCLPTLPGSFRLS
SGADGSNSSPNSAASFSGHATPSQQPEPVVHSLKVVWRKLGDAAGSCPGIRQHLSGNQYKGPM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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