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Report for CCDS46492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46492.1 Public Homo sapiens 2 ALS2 24 110 108 CCDS HistoryNCBI Gene:57679Re-query CCDS DB by CCDS ID:46492.1Re-query CCDS DB by GeneID:57679See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46492.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409632.7 ENSP00000386384.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409632.7Link to Ensembl Protein Viewer:ENSP00000386384.3Re-query CCDS DB by Nucleotide ID:ENST00000409632Re-query CCDS DB by Protein ID:ENSP00000386384
Original member Current member EBI ENST00000467448.5 ENSP00000429223.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000467448.5Link to Ensembl Protein Viewer:ENSP00000429223.1Re-query CCDS DB by Nucleotide ID:ENST00000467448Re-query CCDS DB by Protein ID:ENSP00000429223
Original member Current member EBI ENST00000680188.1 ENSP00000505665.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680188.1Link to Ensembl Protein Viewer:ENSP00000505665.1Re-query CCDS DB by Nucleotide ID:ENST00000680188Re-query CCDS DB by Protein ID:ENSP00000505665
Original member Current member EBI ENST00000679503.1 ENSP00000505968.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679503.1Link to Ensembl Protein Viewer:ENSP00000505968.1Re-query CCDS DB by Nucleotide ID:ENST00000679503Re-query CCDS DB by Protein ID:ENSP00000505968
Original member Current member NCBI NM_001135745.2 NP_001129217.1 Accepted alive Link to Nucleotide Sequence:NM_001135745.2Link to Protein Sequence:NP_001129217.1Re-query CCDS DB by Nucleotide ID:NM_001135745Re-query CCDS DB by Protein ID:NP_001129217Link to BLAST:NP_001129217.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129217.1 396 Q96Q42-2 396 100% 0 0

Chromosomal Locations for CCDS 46492.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 201760803 201761818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201767229 201767383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201768866 201768885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGACTCAAAGAAGAGAAGCTCAACAGAGGCAGAAGGATCCAAGGAAAGAGGCCTGGTCCATATCTGGC
AGGCAGGATCCTTTCCCATAACACCAGAGAGATTGCCAGGCTGGGGAGGAAAGACTGTTTTGCAGGCAGC
CCTCGGAGTGAAACATGGAGTTCTTCTGACTGAAGATGGTGAGGTCTACAGCTTTGGGACTCTTCCCTGG
AGAAGTGGACCAGTGGAGATTTGTCCAAGTAGCCCCATTCTAGAAAATGCCCTGGTTGGGCAATATGTTA
TTACTGTGGCAACAGGAAGCTTCCATAGTGGAGCAGTGACAGACAATGGTGTCGCGTACATGTGGGGAGA
GAATTCTGCTGGCCAGTGTGCAGTAGCCAACCAGCAGTATGTGCCGGAACCAAATCCTGTCAGCATTGCT
GATTCTGAGGCCAGCCCTTTGTTAGCAGTCAGGATTTTACAGTTGGCGTGTGGCGAGGAGCACACTCTGG
CATTGTCAATAAGCAGAGAGATTTGGGCATGGGGTACCGGTTGTCAGTTGGGTCTCATTACCACTGCCTT
CCCAGTGACAAAGCCGCAAAAGGTAGAACATCTTGCTGGGCGAGTGGTGCTTCAAGTTGCCTGTGGTGCT
TTCCACAGCTTAGCCCTTGTACAATGCCTCCCTTCCCAGGATCTGAAGCCAGTCCCAGAACGATGCAACC
AGTGCAGCCAGCTCTTGATTACTATGACTGACAAAGAAGACCATGTGATTATATCAGACAGTCATTGTTG
CCCATTAGGTGTGACACTGACAGAATCTCAGGCAGAAAACCATGCCAGCACTGCTCTCAGCCCCTCCACT
GAAACCCTTGACAGGCAGGAAGAAGTATTTGAGAACACTCTTGTAGCAAATGATCAGTCTGTTGCTACTG
AACTGAATGCAGTAAGTGCTCAGATCACAAGCAGCGATGCCATGTCCTCTCAACAAAATGTCATGGGAAC
AACTGAAATTTCCTCTGCCAGAAACATACCATCATACCCTGACACCCAAGCAGTCAATGAATACCTACGG
AAACTGTCAGATCATTCAGTAAGAGAGGACTCAGAGCATGGTGAAAAGCCAGTGCCATCTCAGGTACCTG
CTCAATTTTATAAAATAAAAGTGTGTCTAGAGTTGAACTGTATGGGCTTTTCTTTAGAAACTTTAAAATG
A

Translation (396 aa):
MDSKKRSSTEAEGSKERGLVHIWQAGSFPITPERLPGWGGKTVLQAALGVKHGVLLTEDGEVYSFGTLPW
RSGPVEICPSSPILENALVGQYVITVATGSFHSGAVTDNGVAYMWGENSAGQCAVANQQYVPEPNPVSIA
DSEASPLLAVRILQLACGEEHTLALSISREIWAWGTGCQLGLITTAFPVTKPQKVEHLAGRVVLQVACGA
FHSLALVQCLPSQDLKPVPERCNQCSQLLITMTDKEDHVIISDSHCCPLGVTLTESQAENHASTALSPST
ETLDRQEEVFENTLVANDQSVATELNAVSAQITSSDAMSSQQNVMGTTEISSARNIPSYPDTQAVNEYLR
KLSDHSVREDSEHGEKPVPSQVPAQFYKIKVCLELNCMGFSLETLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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