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Report for CCDS466.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
466.2 Public Homo sapiens 1 RIMKLA 24 110 108 CCDS HistoryNCBI Gene:284716Re-query CCDS DB by CCDS ID:466.2Re-query CCDS DB by GeneID:284716See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 466.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 466.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000431473.4 ENSP00000414330.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000431473.4Link to Ensembl Protein Viewer:ENSP00000414330.2Re-query CCDS DB by Nucleotide ID:ENST00000431473Re-query CCDS DB by Protein ID:ENSP00000414330
Original member Current member NCBI NM_173642.4 NP_775913.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173642.4Link to Protein Sequence:NP_775913.2Re-query CCDS DB by Nucleotide ID:NM_173642Re-query CCDS DB by Protein ID:NP_775913Link to BLAST:NP_775913.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775913.2 391 Q8IXN7 391 100% 0 0

Chromosomal Locations for CCDS 466.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 42380935 42381097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42399404 42399634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42404511 42404597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42409984 42410187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42414484 42414974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGTGCTCCCAGCTCTGGTTCCTGACGGACCGGCGCATCCGCGAGGACTACCCGCAGGTGCAGATCCTGC
GCGCCCTCCGGCAGCGCTGCTCCGAGCAGGACGTGCGCTTCCGGGCGGTGCTTATGGACCAGATCGCCGT
CACCATCGTCGGCGGCCACCTCGGCCTCCAGCTAAACCAGAAGGCCCTCACCACTTTCCCGGATGTGGTG
CTTGTACGGGTACCCACACCCTCAGTGCAGTCAGACAGTGACATCACTGTCCTGCGACACCTGGAGAAGC
TGGGCTGCCGGTTGGTCAATCGCCCACAGAGCATCTTAAATTGCATCAACAAATTCTGGACGTTCCAAGA
ACTGGCTGGACATGGGGTCCCCATGCCAGACACCTTCTCCTATGGTGGGCATGAAGACTTTTCAAAAATG
ATTGATGAAGCTGAGCCCCTGGGCTACCCAGTCGTGGTGAAGAGCACACGAGGCCACCGGGGAAAAGCTG
TTTTTCTGGCAAGAGATAAACATCACCTCTCTGACATCTGCCATCTGATCCGCCACGATGTGCCCTACCT
GTTCCAGAAGTACGTGAAGGAGTCCCATGGAAAGGACATCCGGGTGGTGGTGGTAGGGGGCCAGGTCATA
GGCTCTATGCTTCGCTGCTCCACTGATGGACGGATGCAGAGCAACTGCTCTCTCGGTGGCGTGGGCGTCA
AGTGTCCGCTGACAGAACAAGGCAAGCAGTTGGCTATTCAGGTGTCCAACATCCTAGGCATGGACTTCTG
TGGCATTGATCTCCTTATCATGGACGATGGCTCCTTTGTGGTGTGTGAGGCAAATGCTAATGTTGGCTTC
CTAGCCTTTGACCAGGCATGCAACTTAGATGTGGGTGGGATCATTGCAGACTATACCATGTCCTTGCTGC
CAAATAGGCAGACTGGAAAGATGGCTGTCCTCCCAGGACTGTCGAGTCCAAGGGAGAAGAACGAGCCGGA
TGGCTGTGCTTCAGCTCAGGGAGTTGCAGAGAGCGTCTATACCATCAACAGTGGGTCTACCTCTAGTGAA
AGTGAGCCTGAACTGGGAGAGATCCGGGATTCCTCAGCAAGCACAATGGGGGCCCCACCCTCCATGCTGC
CCGAACCTGGCTACAACATTAACAACAGGATTGCTTCTGAGTTAAAACTTAAGTGA

Translation (391 aa):
MCSQLWFLTDRRIREDYPQVQILRALRQRCSEQDVRFRAVLMDQIAVTIVGGHLGLQLNQKALTTFPDVV
LVRVPTPSVQSDSDITVLRHLEKLGCRLVNRPQSILNCINKFWTFQELAGHGVPMPDTFSYGGHEDFSKM
IDEAEPLGYPVVVKSTRGHRGKAVFLARDKHHLSDICHLIRHDVPYLFQKYVKESHGKDIRVVVVGGQVI
GSMLRCSTDGRMQSNCSLGGVGVKCPLTEQGKQLAIQVSNILGMDFCGIDLLIMDDGSFVVCEANANVGF
LAFDQACNLDVGGIIADYTMSLLPNRQTGKMAVLPGLSSPREKNEPDGCASAQGVAESVYTINSGSTSSE
SEPELGEIRDSSASTMGAPPSMLPEPGYNINNRIASELKLK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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