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Report for CCDS46741.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46741.1 Public Homo sapiens 3 SETD5 24 110 108 CCDS HistoryNCBI Gene:55209Re-query CCDS DB by CCDS ID:46741.1Re-query CCDS DB by GeneID:55209See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46741.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406341.5 ENSP00000383939.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406341.5Link to Ensembl Protein Viewer:ENSP00000383939.1Re-query CCDS DB by Nucleotide ID:ENST00000406341Re-query CCDS DB by Protein ID:ENSP00000383939
Original member Current member EBI ENST00000402198.7 ENSP00000385852.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000402198.7Link to Ensembl Protein Viewer:ENSP00000385852.2Re-query CCDS DB by Nucleotide ID:ENST00000402198Re-query CCDS DB by Protein ID:ENSP00000385852
Original member Current member NCBI NM_001080517.3 NP_001073986.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080517.3Link to Protein Sequence:NP_001073986.1Re-query CCDS DB by Nucleotide ID:NM_001080517Re-query CCDS DB by Protein ID:NP_001073986Link to BLAST:NP_001073986.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073986.1 1442 Q9C0A6-1 1442 100% 0 0

Chromosomal Locations for CCDS 46741.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 9428939 9429009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9433845 9433950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9434334 9434485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9434824 9434882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9435728 9435906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9440456 9440698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9441593 9441741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9442128 9442245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9443308 9443417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9445048 9445300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9445657 9445740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9447050 9447307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9447686 9448006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9448388 9448630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9453739 9453868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9464425 9464672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9470459 9470929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9473236 9473537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9474449 9474582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9475068 9475156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9475483 9476091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4329 nt):
ATGAGCATTGCAATCCCTCTGGGAGTCACCACATCAGATACATCCTACTCAGATATGGCTGCTGGATCAG
A
C
CCTGAATCTGTGGAGGCTAGTCCAGCAGTTAATGAGAAGAGCGTGTATTCCACTCATAATTATGGGAC
C
ACTCAGAGGCATGGGTGTCGAGGACTGCCTTATGCTACGATCATCCCTCGTTCTGACCTGAATGGCCTG
CCG
TCGCCTGTAGAGGAACGCTGTGGAGACAGCCCGAACTCTGAAGGAGAAACTGTACCTACCTGGTGTC
CT
TGTGGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGGT
T
ATTAGACTTCATCGGCGGAAGCAGGACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGAT
GAG
GAGCTTTCTCCTTCCACTGTGTTGTATACAGCAACACAGCACACACCTACAAGCATCACCTTAACTG
TT
AGAAGAACCAAACCCAAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAGAA
A
ATCAAGAATTCTCCCTCTGAAGCACAGAATTTAGATGAGAATACAACTGAGGGCTGGGAAAATCGGATA
AGA
CTATGGACTGACCAGTATGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGTACAGAACGCGCTTG
AA
CAACACCTACATTCTAGCAAGGAATTTGTGGGCAAACCTACTATTTTAGACACTATTAATAAGACTGA
A
TTGGCCTGTAATAACACAGTTATTGGTTCCCAAATGCAGTTACAGCTGGGAAGAGTCACTCGTGTTCAA
AAG
CACCGGAAGATCCTGAGGGCTGCAAGAGATTTGGCTTTGGACACTCTTATAATAGAGTATCGTGGGA
AA
GTCATGTTACGACAGCAATTTGAGGTCAATGGGCATTTCTTCAAAAAACCATACCCCTTTGTGCTCTT
C
TACTCAAAATTCAATGGTGTAGAGATGTGTGTGGATGCCCGTACTTTCGGTAATGATGCTCGGTTCATC
AGA
AGATCATGTACACCAAATGCAGAGGTGCGACACATGATTGCAGATGGGATGATTCACCTGTGCATCT
AT
GCTGTGTCTGCCATCACCAAGGATGCTGAGGTCACCATAGCATTTGATTATGAGTATAGTAACTGTAA
T
TATAAAGTGGACTGTGCCTGTCACAAGGGAAACCGGAATTGTCCTATACAAAAAAGGAATCCTAATGCT
ACA
GAACTGCCACTCCTACCACCTCCTCCAAGCCTACCCACCATTGGAGCAGAGACTAGACGTAGAAAAG
CA
CGACGGAAAGAGCTAGAGATGGAGCAGCAGAATGAGGCTTCAGAGGAGAATAATGACCAGCAATCACA
A
GAAGTTCCAGAAAAAGTAACTGTATCCAGTGATCATGAGGAAGTAGACAATCCAGAAGAAAAACCAGAA
GAA
GAGAAAGAAGAGGTTATAGATGACCAGGAGAACCTAGCTCATAGCAGGAGGACCAGGGAAGATAGAA
AG
GTAGAAGCCATCATGCATGCTTTTGAAAACTTAGAGAAAAGAAAGAAGCGGCGGGATCAGCCCTTGGA
A
CAGAGCAACTCTGATGTAGAGATTACTACAACCACCTCAGAGACTCCTGTTGGTGAAGAGACAAAAACT
GAA
GCCCCTGAATCTGAAGTTAGCAACTCTGTTTCAAATGTTACCATCCCAAGCACCCCACAGAGTGTTG
GT
GTGAATACCCGGAGGTCTTCCCAAGCAGGGGATATTGCTGCAGAAAAACTAGTCCCCAAGCCACCTCC
A
GCAAAGCCTTCTAGGCCCCGGCCGAAGAGTCGAATTTCTCGGTACAGGACCAGTTCAGCCCAAAGACTA
AAG
CGTCAGAAGCAGGCCAATGCACAGCAGGCAGAATTGTCACAAGCTGCCTTGGAAGAGGGAGGAAGTA
AC
AGTTTAGTAACTCCTACTGAAGCTGGAAGTCTAGACAGTTCAGGAGAAAACAGGCCATTAACAGGGTC
T
GACCCAACTGTGGTGTCAATTACTGGATCCCATGTCAACCGTGCTGCATCTAAATACCCCAAAACCAAA
AAG
TATCTAGTTACAGAATGGTTGAATGACAAAGCAGAGAAGCAAGAGTGCCCTGTTGAGTGCCCTTTAC
GT
ATCACAACGGATCCAACTGTACTGGCAACGACCCTAAACATGTTACCAGGTCTTATCCATTCCCCGTT
A
ATTTGCACCACCCCCAAACACTACATTCGCTTTGGCTCACCCTTTATCCCTGAGAGACGTCGAAGGCCC
CTT
CTGCCTGATGGCACATTCAGCTCCTGTAAGAAGCGCTGGATAAAACAAGCCTTAGAAGAAGGGATGA
CT
CAAACATCATCTGTACCCCAAGAGACTAGAACTCAGCACCTATACCAAAGCAATGAGAATAGTAGCTC
T
TCTAGTATCTGCAAAGACAATGCAGACTTGTTGAGCCCATTAAAGAAATGGAAGTCTCGCTATCTGATG
GAG
CAGAATGTCACCAAGTTACTTCGGCCTCTGTCTCCAGTCACACCACCCCCTCCCAATTCAGGCTCAA
AG
AGTCCCCAGCTGGCCACACCTGGCTCATCTCACCCAGGAGAAGAGGAGTGTCGAAATGGATACAGCCT
C
ATGTTTTCACCAGTCACATCTCTTACTACTGCTAGTCGCTGCAACACTCCTCTACAGTTTGAGCTTTGT
CAC
CGAAAAGACCTGGATTTGGCAAAAGTAGGATACCTTGACTCCAACACTAACAGCTGTGCTGATAGAC
CT
TCCCTACTCAACTCAGGTCATTCTGACCTGGCTCCTCATCCCTCCCTCGGACCCACTTCTGAGACTGG
T
TTCCCAAGCAGAAGTGGAGATGGACATCAGACCCTCGTGAGAAACTCAGACCAGGCATTTCGGACAGAG
TTC
AACTTGATGTATGCCTACTCCCCTTTGAATGCTATGCCTCGAGCAGATGGACTGTATCGAGGATCTC
CT
CTAGTGGGGGATAGGAAGCCTTTACATTTGGATGGGGGATATTGTTCCCCTGCAGAAGGATTTTCCAG
C
AGATATGAACATGGCTTAATGAAAGACCTCTCTCGTGGATCCTTGTCACCTGGTGGTGAAAGGGCCTGT
GAA
GGAGTCCCATCTGCCCCCCAGAACCCACCACAGAGGAAAAAAGTATCCCTGCTGGAGTACCGAAAAC
GG
AAACAAGAAGCTAAGGAAAATTCTGCTGGTGGGGGAGGTGACTCTGCACAGAGCAAAAGCAAGTCTGC
A
GGAGCTGGGCAAGGCAGCAGTAACTCCGTTTCCGACACTGGTGCCCATGGTGTGCAGGGATCCTCAGCC
CGA
ACTCCATCTTCCCCTCACAAAAAATTCTCCCCATCTCATTCCTCTATGTCCCATTTGGAGGCGGTAA
GC
CCATCAGATTCCAGAGGCACTTCTTCATCTCACTGCAGACCTCAAGAGAATATCAGCAGTAGGTGGAT
G
GTTCCCACATCAGTAGAACGACTCCGAGAAGGAGGGAGCATCCCCAAGGTCCTCCGAAGCAGCGTGAGG
GTG
GCCCAAAAGGGAGAGCCCTCTCCCACATGGGAGAGTAACATCACAGAGAAAGACTCAGACCCTGCAG
AT
GGAGAAGGCCCAGAGACATTAAGCTCAGCACTCTCTAAAGGAGCAACAGTTTACAGCCCTTCCAGATA
C
AGCTACCAGCTCCTGCAGTGTGATAGTCCTCGGACAGAATCACAAAGCCTCCTTCAGCAGAGTTCCTCC
CCC
TTCAGAGGACATCCTACACAGTCTCCAGGATACAGTTATCGAACTACTGCACTGAGACCTGGAAACC
CC
CCCTCTCACGGTTCTTCAGAATCATCCCTCTCTTCCACGTCCTATTCCAGCCCCGCCCACCCTGTGTC
C
ACAGACTCGTTGGCCCCATTTACGGGGACACCAGGGTATTTTAGCAGCCAGCCACATTCTGGAAACAGC
ACT
GGCAGCAATCTTCCAAGGAGGAGCTGCCCTTCTAGTGCTGCTAGCCCTACCCTGCAGGGACCCTCAG
AC
TCGCCAACCTCAGATTCAGTTTCTCAGTCCAGCACAGGAACTCTGAGTTCCACCTCCTTTCCTCAGAA
C
TCTAGGTCGTCATTGCCATCAGACTTACGGACTATCAGTCTGCCCAGTGCTGGGCAGTCAGCTGTCTAC
CAG
GCCTCCAGGGTATCTGCGGTTTCCAATTCACAGCACTACCCACACCGTGGGAGTGGGGGTGTGCACC
AG
TACCGACTCCAGCCACTGCAAGGGTCAGGAGTCAAGACTCAGACGGGACTTTCCTAG


Translation (1442 aa):
MSIAIPLGVTTSDTSYSDMAAGSDPESVEASPAVNEKSVYSTHNYGTTQRHGCRGLPYATIIPRSDLNGL
P
SPVEERCGDSPNSEGETVPTWCPCGLSQDGFLLNCDKC
RGMSRGKVIRLHRRKQDNISGGDSSATESWD
E
ELSPSTVLYTATQHTPTSITLTVRRTKPKKRKKSPEKGRAAPKTKKIK
NSPSEAQNLDENTTEGWENRI
R
LWTDQYEEAFTNQYSADVQNALEQHLHSSKEFVGKPTILDTINKTELACNNTVIGSQMQ
LQLGRVTRVQ
K
HRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFK
KPYPFVLFYSKFNGVEMCVDARTFGNDARFI
R
RSCTPNAE
VRHMIADGMIHLCIYAVSAITKDAEVTIAFDYEYSNCNYKVDCACHKGNRNCPIQKRNPNA
T
ELPLLPPPPSLPTIGAETRRRKARRKELEMEQQNEASEENNDQQSQEVPEKVTVSSDHE
EVDNPEEKPE
E
EKEEVIDDQENLAHSRR
TREDRKVEAIMHAFENLEKRKKRRDQPLEQSNSDVEITTTTSETPVGEETKT
E
APESEVSNSVSNVTIPSTPQSVGVNTRRSSQAG
DIAAEKLVPKPPPAKPSRPRPKSRISRYRTSSAQRL
K
RQKQANAQQAELSQAALEEGGSNSLVTPTEAGSLDSSGENRPLTGSDPTVVSITGSHVNRAASKYPKTK
K
YLVTEWLNDKAEKQECPVECPLRITTDPTVLATTLNMLPGLIHSPLICTTPKHYIRFGSPFIPERRRRP
L
LPDGTFSSCKK
RWIKQALEEGMTQTSSVPQETRTQHLYQSNENSSSSSICKDNADLLSPLKKWKSRYLM
E
QNVTKLLRPLSPVTPPPPNSGSKSPQLATPGSSHPGEEECRNGYSLMFSPVTSLTTASRCNTPLQFE
LC
H
RKDLDLAKVGYLDSNTNSCADRPSLLNSGHSDLAPHPSLGPTSETGFPSRSGDGHQTLVRNSDQAFRTE
F
NLMYAYSPLNAMPRADGLYRGSPLVGDRKPLHLDGGYCSPAEGFSSRYEHGLMKDLSRGSLSPGGERAC
E
GVPSAPQNPPQRKK
VSLLEYRKRKQEAKENSAGGGGDSAQSKSKSAGAGQGSSNSVSDTGAHGVQGSSA
R
TPSSPHKKFSPSHSSMSHLEAVSPSDSRGTSSSHCRPQENISSR
WMVPTSVERLREGGSIPKVLRSSVR
V
AQKGEPSPTWESNITEKDS
DPADGEGPETLSSALSKGATVYSPSRYSYQLLQCDSPRTESQSLLQQSSS
P
FRGHPTQSPGYSYRTTALRPGNPPSHGSSESSLSSTSYSSPAHPVSTDSLAPFTGTPGYFSSQPHSGNS
T
GSNLPRRSCPSSAASPTLQGPSDSPTSDSVSQSSTGTLSSTSFPQNSRSSLPSDLRTISLPSAGQSAVY
Q
ASRVSAVSNSQHYPHRGSGGVHQYRLQPLQGSGVKTQTGLS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser