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Report for CCDS46805.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46805.2 Public Homo sapiens 3 ZBTB47 24 110 108 CCDS HistoryNCBI Gene:92999Re-query CCDS DB by CCDS ID:46805.2Re-query CCDS DB by GeneID:92999See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 46805.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46805.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000232974.11 ENSP00000232974.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000232974.11Link to Ensembl Protein Viewer:ENSP00000232974.6Re-query CCDS DB by Nucleotide ID:ENST00000232974Re-query CCDS DB by Protein ID:ENSP00000232974
Original member Current member NCBI NM_145166.4 NP_660149.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145166.4Link to Protein Sequence:NP_660149.2Re-query CCDS DB by Nucleotide ID:NM_145166Re-query CCDS DB by Protein ID:NP_660149Link to BLAST:NP_660149.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660149.2 747 Q9UFB7-1 747 100% 0 0

Chromosomal Locations for CCDS 46805.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 42658356 42659828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42661485 42661632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42663012 42663127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42663797 42663941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42664237 42664598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGGGCCGCCTGAACGAGCAGCGCCTCTTCCAGCCTGACCTCTGCGACGTGGACTTGGTGCTGGTGCCCC
AGCGCAGCGTCTTTCCGGCACACAAGGGTGTGCTAGCCGCCTACAGCCAGTTCTTCCACTCACTCTTCAC
CCAGAACAAGCAGCTGCAGCGTGTGGAGCTGTCCCTGGAGGCACTGGCACCTGGTGGCCTGCAGCAGATC
CTCAACTTCATCTATACGTCCAAGCTGCTGGTCAACGCGGCCAACGTCCACGAGGTGCTCAGCGCCGCCT
CATTGCTGCAGATGGCTGACATCGCTGCGTCCTGCCAAGAGCTGCTGGACGCCCGCTCTCTAGGCCCACC
AGGTCCGGGCACTGTGGCCCTGGCCCAGCCGGCTGCCAGCTGCACTCCAGCTGCGCCGCCCTACTACTGT
GACATCAAGCAGGAGGCCGACACCCCAGGCCTGCCCAAGATCTATGCCCGCGAGGGCCCTGACCCTTACT
CGGTGCGTGTTGAGGACGGGGCAGGGACTGCTGGTGGCACAGTGCCTGCCACCATTGGGCCAGCCCAGCC
CTTCTTTAAGGAGGAGAAGGAGGGTGGTGTCGAGGAGGCCGGTGGGCCCCCAGCCAGCTTGTGCAAGCTG
GAGGGTGGAGAAGAGTTGGAGGAAGAGCTTGGGGGTTCTGGCACCTACAGCCGCAGGGAGCAATCCCAGA
TCATCGTGGAGGTGAACCTCAACAACCAGACACTGCACGTGTCCACGGGGCCAGAGGGGAAGCCAGGTGC
CGGGCCAAGCCCAGCCACCGTGGTTCTGGGCCGGGAGGACGGGCTGCAGAGACACTCGGACGAGGAGGAG
GAGGACGACGAGGAGGAGGAGGAGGAAGAAGAGGAAGAGGAAGGTGGTGGCAGTGGACGGGAGGAGGAGG
AGGAGGAAGAGGGTGGCAGTCAGGGAGAAGAGGAAGAAGAGGAGGAGGACGGGCACAGTGAGCAGGAAGA
GGAAGAGGAGGAGGAAGAGGAGGAAGGGCCTAGTGAGCAGGATCAAGAGAGCTCTGAGGAGGAGGAGGGG
GAGGAGGGGGAGGCTGGGGGCAAGCAGGGGCCACGGGGAAGCCGAAGCAGCCGGGCAGACCCCCCTCCCC
ACAGTCACATGGCCACACGGTCCCGGGAGAACGCCCGGCGCCGGGGTACCCCTGAACCTGAAGAAGCTGG
GCGGCGGGGTGGGAAGAGGCCAAAGCCACCCCCTGGAGTGGCCTCTGCATCGGCCCGAGGGCCGCCAGCC
ACTGATGGGCTGGGGGCCAAGGTGAAGCTGGAGGAGAAGCAGCACCATCCATGCCAGAAGTGCCCACGAG
TTTTCAACAACCGCTGGTACCTGGAGAAACACATGAATGTGACCCACAGCCGCATGCAGATCTGCGACCA
GTGCGGCAAGCGCTTCCTGCTGGAGAGCGAGCTGCTGCTGCACAGGCAGACAGACTGCGAGCGCAACATC
CAGTGTGTGACATGTGGCAAAGCTTTCAAGAAGCTTTGGTCCCTCCATGAGCATAACAAGATTGTGCACG
GCTACGCAGAGAAGAAGTTCTCATGCGAGATCTGTGAGAAGAAGTTCTACACCATGGCCCACGTGCGTAA
GCACATGGTTGCCCACACCAAGGACATGCCCTTCACCTGCGAGACCTGCGGAAAGTCCTTCAAGCGCAGC
ATGTCCCTCAAGGTGCACTCACTGCAGCACTCAGGGGAGAAGCCGTTCAGATGTGAGAACTGCAATGAGC
GCTTCCAGTACAAGTACCAGCTGCGGTCACACATGAGCATCCACATTGGCCACAAGCAGTTCATGTGCCA
ATGGTGCGGCAAGGACTTCAACATGAAGCAGTACTTCGATGAGCACATGAAGACCCACACAGGAGAGAAG
CCGTACATCTGCGAGATCTGTGGCAAGAGCTTCACCAGCCGGCCCAACATGAAGCGGCACCGGCGCACGC
ACACGGGCGAGAAGCCGTACCCGTGCGACGTGTGTGGCCAGCGCTTCCGCTTCTCCAACATGCTCAAGGC
CCACAAGGAGAAGTGCTTCCGCGTCAGCCACACCCTGGCCGGCGACGGCGTCCCCGCTGCCCCAGGCCTG
CCCCCAACCCAGCCCCAGGCGCACGCACTGCCCCTGCTCCCGGGGCTGCCCCAGACCCTGCCGCCCCCGC
CCCACCTGCCGCCCCCGCCTCCGCTCTTCCCCACCACTGCCAGCCCCGGCGGGAGGATGAACGCCAACAA
CTAG

Translation (747 aa):
MGRLNEQRLFQPDLCDVDLVLVPQRSVFPAHKGVLAAYSQFFHSLFTQNKQLQRVELSLEALAPGGLQQI
LNFIYTSKLLVNAANVHEVLSAASLLQMADIAASCQELLDARSLGPPGPGTVALAQPAASCTPAAPPYYC
DIKQEADTPGLPKIYAREGPDPYSVRVEDGAGTAGGTVPATIGPAQPFFKEEKEGGVEEAGGPPASLCKL
EGGEELEEELGGSGTYSRREQSQIIVEVNLNNQTLHVSTGPEGKPGAGPSPATVVLGREDGLQRHSDEEE
EDDEEEEEEEEEEEGGGSGREEEEEEEGGSQGEEEEEEEDGHSEQEEEEEEEEEEGPSEQDQESSEEEEG
EEGEAGGKQGPRGSRSSRADPPPHSHMATRSRENARRRGTPEPEEAGRRGGKRPKPPPGVASASARGPPA
TDGLGAKVKLEEKQHHPCQKCPRVFNNRWYLEKHMNVTHSRMQICDQCGKRFLLESELLLHRQTDCERNI
QCVTCGKAFKKLWSLHEHNKIVHGYAEKKFSCEICEKKFYTMAHVRKHMVAHTKDMPFTCETCGKSFKRS
MSLKVHSLQHSGEKPFRCENCNERFQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQYFDEHMKTHTGEK
PYICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVSHTLAGDGVPAAPGL
PPTQPQAHALPLLPGLPQTLPPPPHLPPPPPLFPTTASPGGRMNANN


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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