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Report for CCDS46961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46961.1 Public Homo sapiens 3 TBL1XR1 24 110 108 CCDS HistoryNCBI Gene:79718Re-query CCDS DB by CCDS ID:46961.1Re-query CCDS DB by GeneID:79718See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46961.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352800.10 ENSP00000263964.11 Accepted alive Link to Ensembl Transcript Viewer:ENST00000352800.10Link to Ensembl Protein Viewer:ENSP00000263964.11Re-query CCDS DB by Nucleotide ID:ENST00000352800Re-query CCDS DB by Protein ID:ENSP00000263964
Original member Current member EBI ENST00000422442.6 ENSP00000387849.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422442.6Link to Ensembl Protein Viewer:ENSP00000387849.3Re-query CCDS DB by Nucleotide ID:ENST00000422442Re-query CCDS DB by Protein ID:ENSP00000387849
Original member Current member EBI ENST00000422066.6 ENSP00000398477.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422066.6Link to Ensembl Protein Viewer:ENSP00000398477.2Re-query CCDS DB by Nucleotide ID:ENST00000422066Re-query CCDS DB by Protein ID:ENSP00000398477
Original member Current member EBI ENST00000430069.5 ENSP00000405574.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000430069.5Link to Ensembl Protein Viewer:ENSP00000405574.1Re-query CCDS DB by Nucleotide ID:ENST00000430069Re-query CCDS DB by Protein ID:ENSP00000405574
Original member Current member EBI ENST00000457928.7 ENSP00000413251.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000457928.7Link to Ensembl Protein Viewer:ENSP00000413251.3Re-query CCDS DB by Nucleotide ID:ENST00000457928Re-query CCDS DB by Protein ID:ENSP00000413251
Original member Current member EBI ENST00000673974.1 ENSP00000501274.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673974.1Link to Ensembl Protein Viewer:ENSP00000501274.1Re-query CCDS DB by Nucleotide ID:ENST00000673974Re-query CCDS DB by Protein ID:ENSP00000501274
Original member Current member EBI ENST00000704383.1 ENSP00000515885.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704383.1Link to Ensembl Protein Viewer:ENSP00000515885.1Re-query CCDS DB by Nucleotide ID:ENST00000704383Re-query CCDS DB by Protein ID:ENSP00000515885
Original member Current member EBI ENST00000704384.1 ENSP00000515886.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704384.1Link to Ensembl Protein Viewer:ENSP00000515886.1Re-query CCDS DB by Nucleotide ID:ENST00000704384Re-query CCDS DB by Protein ID:ENSP00000515886
Original member Current member EBI ENST00000704385.1 ENSP00000515887.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704385.1Link to Ensembl Protein Viewer:ENSP00000515887.1Re-query CCDS DB by Nucleotide ID:ENST00000704385Re-query CCDS DB by Protein ID:ENSP00000515887
Original member Current member NCBI NM_001321193.3 NP_001308122.1 Accepted alive Link to Nucleotide Sequence:NM_001321193.3Link to Protein Sequence:NP_001308122.1Re-query CCDS DB by Nucleotide ID:NM_001321193Re-query CCDS DB by Protein ID:NP_001308122Link to BLAST:NP_001308122.1
Original member Current member NCBI NM_001321194.3 NP_001308123.1 Accepted alive Link to Nucleotide Sequence:NM_001321194.3Link to Protein Sequence:NP_001308123.1Re-query CCDS DB by Nucleotide ID:NM_001321194Re-query CCDS DB by Protein ID:NP_001308123Link to BLAST:NP_001308123.1
Original member Current member NCBI NM_001374327.1 NP_001361256.1 Accepted alive Link to Nucleotide Sequence:NM_001374327.1Link to Protein Sequence:NP_001361256.1Re-query CCDS DB by Nucleotide ID:NM_001374327Re-query CCDS DB by Protein ID:NP_001361256Link to BLAST:NP_001361256.1
Original member Current member NCBI NM_001374328.1 NP_001361257.1 Accepted alive Link to Nucleotide Sequence:NM_001374328.1Link to Protein Sequence:NP_001361257.1Re-query CCDS DB by Nucleotide ID:NM_001374328Re-query CCDS DB by Protein ID:NP_001361257Link to BLAST:NP_001361257.1
Original member Current member NCBI NM_001374329.1 NP_001361258.1 Accepted alive Link to Nucleotide Sequence:NM_001374329.1Link to Protein Sequence:NP_001361258.1Re-query CCDS DB by Nucleotide ID:NM_001374329Re-query CCDS DB by Protein ID:NP_001361258Link to BLAST:NP_001361258.1
Original member Current member NCBI NM_024665.7 NP_078941.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024665.7Link to Protein Sequence:NP_078941.2Re-query CCDS DB by Nucleotide ID:NM_024665Re-query CCDS DB by Protein ID:NP_078941Link to BLAST:NP_078941.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308122.1 514 Q9BZK7 514 100% 0 0
NP_001308123.1 514 Q9BZK7 514 100% 0 0
NP_001361256.1 514 Q9BZK7 514 100% 0 0
NP_001361257.1 514 Q9BZK7 514 100% 0 0
NP_001361258.1 514 Q9BZK7 514 100% 0 0
NP_078941.2 514 Q9BZK7 514 100% 0 0

Chromosomal Locations for CCDS 46961.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 177025498 177025524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 177026373 177026474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 177032971 177033136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 177034198 177034325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 177038098 177038172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 177038313 177038434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 177046129 177046189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 177047300 177047397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 177047486 177047549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 177049997 177050138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 177050478 177050610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 177051504 177051726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 177053773 177053918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 177064920 177064977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGAGTATAAGCAGTGATGAGGTCAACTTCTTGGTATATAGATACTTGCAAGAGTCAGGATTTTCTCATT
CAGCATTTACCTTTGGTATAGAAAGCCATATCAGTCAGTCCAATATAAATGGTGCCCTCGTCCCACCCGC
TGCATTGATTTCTATCATCCAGAAAGGTCTACAGTATGTAGAAGCAGAAGTTAGTATTAATGAGGATGGT
ACCTTGTTTGATGGTCGACCAATAGAGTCTCTGTCCCTGATAGATGCCGTAATGCCTGATGTAGTACAAA
CAAGACAACAAGCTTATAGAGATAAGCTTGCACAGCAACAGGCAGCAGCTGCTGCAGCTGCCGCAGCTGC
AGCCAGCCAACAAGGATCTGCAAAAAATGGAGAAAACACAGCAAATGGGGAGGAGAATGGAGCACATACT
ATAGCAAATAATCATACTGATATGATGGAAGTGGATGGGGATGTTGAAATCCCTCCTAATAAAGCTGTTG
TGTTGCGGGGCCATGAATCTGAAGTTTTTATCTGTGCCTGGAACCCTGTTAGTGATCTCCTAGCATCAGG
GTCTGGAGACTCAACAGCAAGAATATGGAATCTTAGTGAGAACAGCACCAGTGGCTCTACACAGTTAGTA
CTTAGACATTGTATACGAGAAGGAGGGCAAGATGTTCCAAGCAACAAGGATGTCACATCTCTAGATTGGA
ATAGTGAAGGTACACTTCTAGCAACTGGTTCCTATGATGGGTTTGCCAGAATATGGACTAAAGATGGTAA
CCTTGCTAGCACCTTAGGGCAGCATAAAGGCCCTATATTTGCATTAAAATGGAATAAGAAAGGAAATTTC
ATCCTAAGTGCTGGAGTAGACAAGACTACAATTATTTGGGACGCACATACTGGTGAAGCCAAGCAACAGT
TTCCTTTTCATTCAGCACCAGCATTGGATGTTGATTGGCAGAGCAACAACACCTTTGCTTCTTGTAGTAC
AGATATGTGCATTCATGTCTGTAAATTAGGACAAGACAGACCTATTAAAACATTCCAAGGACATACGAAT
GAAGTAAATGCTATCAAATGGGACCCAACTGGCAATCTCTTGGCCTCCTGTTCTGACGACATGACTTTAA
AGATATGGAGTATGAAACAAGACAATTGTGTCCATGATTTGCAAGCACATAATAAAGAAATTTATACTAT
CAAATGGAGTCCAACAGGACCAGGGACTAATAATCCAAATGCCAACCTTATGTTAGCAAGTGCATCCTTT
GATTCTACTGTTAGGTTATGGGATGTAGACCGAGGGATATGCATCCATACCTTGACAAAACACCAAGAGC
CTGTGTACAGTGTAGCTTTCAGTCCTGATGGCAGGTATCTGGCAAGTGGTTCTTTTGACAAATGTGTACA
CATCTGGAACACGCAGACAGGTGCTCTAGTTCACAGCTATAGGGGAACAGGTGGAATATTTGAAGTTTGC
TGGAATGCAGCAGGAGACAAAGTTGGAGCCAGTGCATCAGATGGTTCAGTTTGTGTATTAGACCTTCGGA
AATAG

Translation (514 aa):
MSISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDG
TLFDGRPIESLSLIDAVMPDVVQTRQQAYRDKLAQQQAAAAAAAAAAASQQGSAKNGENTANGEENGAHT
IANNHTDMMEVDGDVEIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLV
LRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNF
ILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTN
EVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASF
DSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVC
WNAAGDKVGASASDGSVCVLDLRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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