NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47003.1 Public Homo sapiens 4 MSANTD1 24 110 108 CCDS HistoryNCBI Gene:345222Re-query CCDS DB by CCDS ID:47003.1Re-query CCDS DB by GeneID:345222See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47003.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000438480.7 ENSP00000411584.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000438480.7Link to Ensembl Protein Viewer:ENSP00000411584.2Re-query CCDS DB by Nucleotide ID:ENST00000438480Re-query CCDS DB by Protein ID:ENSP00000411584
Original member Current member NCBI NM_001042690.2 NP_001036155.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042690.2Link to Protein Sequence:NP_001036155.1Re-query CCDS DB by Nucleotide ID:NM_001042690Re-query CCDS DB by Protein ID:NP_001036155Link to BLAST:NP_001036155.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036155.1 278 Q6ZTZ1 278 100% 0 0

Chromosomal Locations for CCDS 47003.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 3249223 3249542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3253207 3253482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3255725 3255965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGGTGCGTGGGGCCGGGCCGGGGCCCTCGCTGAGCGCGCTCTCTCACCCCACAGGCGCCTCCGGCATGG
CGGCGGCCGAGGGGCCCGGCTACCTCGTGTCTCCCCAGGCGGAGAAGCACCGGCGGGCCCGCAACTGGAC
GGACGCCGAGATGCGCGGCCTCATGCTGGTCTGGGAGGAGTTCTTCGACGAGCTCAAGCAGACCAAGCGC
AACGCCAAGGTGTACGAGAAGATGGCCAGCAAGCTCTTCGAGATGACCGGCGAGCGCAGGCTGGGCGAGG
AGATCAAGATCAAGATCACCAACATGACCTTCCAGTACAGGAAATTAAAATGCATGACAGATAGCGAGTC
CGCCCCGCCCGACTGGCCCTATTACCTAGCCATTGATGGGATTCTGGCCAAGGTCCCCGAGTCCTGTGAT
GGCAAACTGCCGGACAGCCAGCCGCCGGGGCCCTCCACGTCCCAGACCGAGGCGTCCCTGTCGCCGCCCG
CTAAGTCCACCCCTCTGTACTTCCCGTATAACCAGTGCTCCTACGAAGGCCGCTTCGAGGATGATCGCTC
CGACAGCTCCTCCAGCTTACTGTCCCTTAAGTTCAGGTCGGAGGAGCGGCCGGTGAAGAAGCGCAAGGTG
CAGAGCTGCCACCTGCAGAAGAAGCAGCTGCGGCTGCTGGAGGCCATGGTGGAGGAGCAGCGCCGGCTGA
GCCGCGCCGTGGAGGAGACCTGCCGCGAGGTGCGCCGCGTGCTGGACCAGCAGCACATCCTGCAGGTGCA
GAGCCTGCAGCTGCAGGAGCGCATGATGAGTCTGCTGGAGAGGATCATCACCAAGTCCAGCGTCTAG

Translation (278 aa):
MVRGAGPGPSLSALSHPTGASGMAAAEGPGYLVSPQAEKHRRARNWTDAEMRGLMLVWEEFFDELKQTKR
NAKVYEKMASKLFEMTGERRLGEEIKIKITNMTFQYRKLKCMTDSESAPPDWPYYLAIDGILAKVPESCD
GKLPDSQPPGPSTSQTEASLSPPAKSTPLYFPYNQCSYEGRFEDDRSDSSSSLLSLKFRSEERPVKKRKV
QSCHLQKKQLRLLEAMVEEQRRLSRAVEETCREVRRVLDQQHILQVQSLQLQERMMSLLERIITKSSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH