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Report for CCDS47008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47008.1 Public Homo sapiens 4 SORCS2 24 110 108 CCDS HistoryNCBI Gene:57537Re-query CCDS DB by CCDS ID:47008.1Re-query CCDS DB by GeneID:57537See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47008.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000507866.6 ENSP00000422185.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000507866.6Link to Ensembl Protein Viewer:ENSP00000422185.2Re-query CCDS DB by Nucleotide ID:ENST00000507866Re-query CCDS DB by Protein ID:ENSP00000422185
Original member Current member NCBI NM_020777.3 NP_065828.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020777.3Link to Protein Sequence:NP_065828.2Re-query CCDS DB by Nucleotide ID:NM_020777Re-query CCDS DB by Protein ID:NP_065828Link to BLAST:NP_065828.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065828.2 1159 Q96PQ0 1159 100% 0 0

Chromosomal Locations for CCDS 47008.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 7192647 7193126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7396288 7396355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7531530 7531629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7638328 7638492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7654134 7654207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7661500 7661564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7664353 7664471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7667124 7667213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7676050 7676229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7682743 7682889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7689486 7689588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7697198 7697274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7703280 7703371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7704177 7704284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7712733 7712853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7714240 7714373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7715183 7715311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7718012 7718183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7723697 7723883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7725154 7725287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7726780 7726903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7728350 7728462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7729587 7729712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7733322 7733421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7734272 7734374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7737069 7737172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7740200 7740264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3480 nt):
ATGGCGCACCGGGGGCCCTCGCGCGCCTCGAAGGGCCCCGGCCCCACCGCCCGAGCCCCGAGCCCCGGGG
CT
CCGCCGCCGCCGCGCTCGCCGCGCTCGCGGCCGCTCCTGCTGCTGCTGCTGCTGCTGGGCGCCTGCGG
G
GCGGCGGGGCGCTCCCCTGAGCCCGGGCGCCTGGGTCCTCACGCCCAACTGACCCGGGTGCCGCGGAGC
CCT
CCCGCGGGGCGCGCGGAGCCCGGTGGCGGCGAGGACCGGCAGGCGCGCGGCACGGAGCCAGGCGCCC
CG
GGTCCGAGTCCCGGTCCCGCTCCTGGTCCCGGCGAGGACGGCGCCCCCGCCGCGGGCTACCGGCGCTG
G
GAGCGGGCGGCGCCGCTGGCCGGAGTGGCTTCGCGGGCGCAGGTCTCGCTCATCAGCACGTCGTTCGTG
CTC
AAGGGGGACGCGACGCACAACCAGGCGATGGTGCACTGGACGGGCGAGAACAGCAGCGTGATCTTGA
TC
CTGACGAAGTACTACCACGCAGACATGGGGAAGGTTCTGGAAAGTTCTCTGTGGCGGTCATCAGATTT
C
GGGACGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACCGTCATCGACAATTTCTACATCTGC
CCG
ACCAACAAGAGGAAGGTCATCCTTGTCAGCTCCTCACTCAGTGACCGGGACCAGAGCCTATTCCTCA
GC
GCAGACGAAGGCGCCACCTTTCAGAAGCAGCCCATTCCCTTCTTCGTGGAAACTCTGATTTTCCACCC
T
AAGGAGGAGGACAAGGTCCTCGCCTACACAAAGGAGAGCAAGCTCTACGTGTCATCTGACTTGGGGAAA
AAG
TGGACACTTCTGCAAGAGCGAGTGACCAAAGACCACGTGTTCTGGTCTGTGTCTGGGGTGGACGCTG
AC
CCTGACTTGGTCCACGTGGAAGCCCAAGACCTCGGTGGAGATTTTCGGTACGTCACCTGCGCAATCCA
C
AATTGCTCCGAGAAGATGCTGACAGCCCCATTCGCAGGCCCCATTGACCACGGGTCTCTGACCGTGCAG
GAC
GATTACATCTTCTTTAAGGCAACATCAGCAAACCAGACAAAATACTACGTCTCTTATCGTCGAAATG
AA
TTTGTCCTGATGAAGCTGCCGAAGTATGCATTGCCAAAGGATCTGCAGATCATCAGCACGGACGAGAG
T
CAGGTGTTCGTGGCGGTGCAGGAGTGGTACCAGATGGACACCTACAACCTGTACCAGTCGGACCCACGG
GGC
GTGCGCTACGCGCTGGTGCTGCAGGACGTGCGCAGCTCACGGCAGGCGGAGGAGAGCGTGCTCATCG
AC
ATCCTGGAGGTCAGAGGGGTGAAAGGAGTCTTCCTGGCAAACCAAAAAATTGATGGGAAAGTGATGAC
G
CTTATAACCTACAACAAGGGCCGCGACTGGGATTACCTGAGGCCACCCAGCATGGACATGAATGGAAAA
CCA
ACCAACTGCAAGCCTCCAGACTGCCACCTGCACCTGCACCTGCGCTGGGCAGACAACCCCTACGTAT
CA
GGCACCGTGCACACCAAGGACACCGCCCCAGGCCTCATCATGGGTGCAGGTAACCTGGGCTCACAGCT
G
GTGGAATATAAAGAAGAAATGTACATCACGTCAGACTGTGGTCACACCTGGCGGCAGGTGTTTGAGGAA
GAG
CATCACATCCTGTACCTGGACCACGGCGGCGTGATCGTGGCCATCAAAGACACCTCCATCCCTTTGA
AG
ATCCTCAAGTTCAGTGTGGACGAGGGCCTCACCTGGAGCACGCACAACTTCACCAGCACCTCGGTGTT
T
GTGGACGGGCTGCTGAGTGAGCCAGGGGACGAGACGCTGGTCATGACGGTCTTTGGCCACATCAGCTTC
CGC
TCCGATTGGGAGCTGGTCAAGGTGGACTTCCGGCCCTCATTCTCCAGGCAGTGCGGCGAGGAGGACT
AC
AGCTCCTGGGAGCTCTCCAACCTGCAGGGCGACCGCTGTATCATGGGCCAGCAGAGAAGTTTCCGGAA
A
AGAAAGTCCACGTCCTGGTGCATCAAGGGGAGGAGCTTCACGTCGGCGCTCACGTCCCGCGTGTGCGAG
TGC
CGGGACTCGGACTTCCTGTGCGACTACGGATTTGAGCGCTCCTCCTCCTCAGAGTCCAGCACCAACA
AG
TGCTCTGCCAACTTCTGGTTTAACCCATTGTCCCCGCCTGACGACTGTGCCCTGGGCCAGACCTACAC
C
AGCAGCCTTGGGTACCGGAAAGTGGTGTCCAACGTGTGTGAGGGTGGGGTGGACATGCAGCAGAGTCAG
GTG
CAGCTGCAGTGCCCCCTCACGCCGCCCCGGGGCCTGCAGGTCAGCATTCAAGGCGAGGCGGTGGCCG
TG
CGGCCTGGAGAGGACGTCCTGTTTGTGGTGCGGCAGGAGCAGGGTGATGTCCTGACTACCAAGTACCA
G
GTAGACCTTGGGGACGGCTTCAAGGCCATGTACGTGAACCTTACACTGACCGGGGAGCCCATCCGGCAC
CGC
TACGAGAGCCCCGGCATCTACCGCGTGTCCGTCAGGGCAGAGAACACGGCAGGCCACGATGAGGCGG
TG
CTCTTTGTCCAGGTCAACTCCCCCCTGCAGGCCCTCTACCTGGAGGTGGTTCCTGTCATTGGCCTCAA
C
CAGGAGGTGAACCTCACAGCTGTGCTGCTTCCCTTGAACCCTAACCTCACCGTCTTCTACTGGTGGATC
GGC
CACAGCCTGCAGCCCCTCCTTTCCCTGGATAATTCTGTGACAACGCGGTTTTCGGACACGGGCGACG
TG
CGTGTGACGGTGCAGGCCGCCTGTGGGAACTCGGTGCTGCAGGACTCCAGGGTCCTCCGTGTGCTGGA
T
CAATTTCAAGTCATGCCTCTGCAGTTTTCCAAGGAGCTGGATGCCTACAACCCCAACACCCCTGAGTGG
AGG
GAAGACGTGGGCCTGGTGGTCACCCGGCTGCTCTCCAAGGAGACCAGCGTCCCTCAGGAGCTTCTGG
TG
ACTGTGGTGAAGCCGGGGCTGCCCACTTTGGCCGATCTGTACGTGCTCCTGCCCCCTCCCAGGCCCAC
A
AGGAAGAGGAGCCTCTCGAGTGATAAGAGGCTCGCCGCCATCCAGCAGGTGCTGAACGCACAGAAGATC
AGC
TTCCTCCTGCGAGGCGGAGTCCGGGTCCTGGTGGCCCTGCGGGACACAGGCACAGGTGCTGAGCAGC
TG
GGCGGCGGTGGCGGCTACTGGGCGGTAGTGGTGCTGTTTGTCATCGGGCTCTTCGCAGCGGGAGCCTT
C
ATCCTCTACAAGTTCAAAAGGAAACGGCCAGGCAGGACCGTGTACGCCCAAATGCACAACGAGAAGGAG
CAG
GAGATGACCAGCCCTGTGAGTCACAGTGAGGACGTCCAGGGCGCTGTCCAGGGCAACCACTCAGGCG
TG
GTCCTGAGCATCAACTCCCGAGAGATGCACAGCTACCTGGTGAGCTGA


Translation (1159 aa):
MAHRGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRS
P
PAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERAAPLAGVASRAQVSLISTSFV
L
KGDATHNQAMVHWTGENSS
VILILTKYYHADMGKVLESSLWRSSDFGTSYTKLTLQPGVTTVIDNFYIC
P
TNKRK
VILVSSSLSDRDQSLFLSADEGATFQKQPIPFFVETLIFHPKEEDKVLAYTKESKLYVSSDLGK
K
WTLLQERVTKDHVF
WSVSGVDADPDLVHVEAQDLGGDFRYVTCAIHNCSEKMLTAPFAGPIDHGSLTVQ
D
DYIFFK
ATSANQTKYYVSYRRNEFVLMKLPKYALPKDLQIISTDESQVFVAVQEWYQMDTYNLYQSDPR
G
VRYALVLQDVRSSRQAEESVLIDILE
VRGVKGVFLANQKIDGKVMTLITYNKGRDWDYLRPPSMDMNGK
P
TNCKP
PDCHLHLHLRWADNPYVSGTVHTKDTAPGLIMGAGNLGSQLVEYKEEMYITSDCGHTWRQVFEE
E
HHILYLDHGGVIVAIKDTSIPLKIL
KFSVDEGLTWSTHNFTSTSVFVDGLLSEPGDETLVMTVFGHISF
R
SDWELVKVDFRPSFSRQCGEEDYSSWELSNLQ
GDRCIMGQQRSFRKRKSTSWCIKGRSFTSALTSRVCE
C
RDSDFL
CDYGFERSSSSESSTNKCSANFWFNPLSPPDDCALGQTYTSSLGYRKVVSNVCEGGVDMQQSQ
V
QLQCPLTPPRGLQVSIQGEAVAVRPGEDVLFVVRQEQ
GDVLTTKYQVDLGDGFKAMYVNLTLTGEPIRH
R
YESPGIYRVSVRAENTAGHDEAVLFVQVN
SPLQALYLEVVPVIGLNQEVNLTAVLLPLNPNLTVFYWWI
G
HSLQ
PLLSLDNSVTTRFSDTGDVRVTVQAACGNSVLQDSRVLRVLDQFQVMPLQFSKELDAYNPNTPEW
R
EDVGLVVTRLLSK
ETSVPQELLVTVVKPGLPTLADLYVLLPPPRPTRKRSLSSDKRLAAIQQVLNAQKI
S
FLLRGGVRVLVALRDTGT
GAEQLGGGGGYWAVVVLFVIGLFAAGAFILYKFKRKRPGRTVYAQMHNEKE
Q
EMTSPVSHSEDVQGAVQ
GNHSGVVLSINSREMHSYLVS



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser