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Report for CCDS47147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47147.1 Public Homo sapiens 4 TRIM2 24 110 108 CCDS HistoryNCBI Gene:23321Re-query CCDS DB by CCDS ID:47147.1Re-query CCDS DB by GeneID:23321See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47147.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000437508.7 ENSP00000415812.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437508.7Link to Ensembl Protein Viewer:ENSP00000415812.2Re-query CCDS DB by Nucleotide ID:ENST00000437508Re-query CCDS DB by Protein ID:ENSP00000415812
Original member Current member EBI ENST00000676252.1 ENSP00000501586.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676252.1Link to Ensembl Protein Viewer:ENSP00000501586.1Re-query CCDS DB by Nucleotide ID:ENST00000676252Re-query CCDS DB by Protein ID:ENSP00000501586
Original member Current member EBI ENST00000676423.1 ENSP00000501612.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676423.1Link to Ensembl Protein Viewer:ENSP00000501612.1Re-query CCDS DB by Nucleotide ID:ENST00000676423Re-query CCDS DB by Protein ID:ENSP00000501612
Original member Current member EBI ENST00000674876.1 ENSP00000501652.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674876.1Link to Ensembl Protein Viewer:ENSP00000501652.1Re-query CCDS DB by Nucleotide ID:ENST00000674876Re-query CCDS DB by Protein ID:ENSP00000501652
Original member Current member EBI ENST00000675745.1 ENSP00000501662.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675745.1Link to Ensembl Protein Viewer:ENSP00000501662.1Re-query CCDS DB by Nucleotide ID:ENST00000675745Re-query CCDS DB by Protein ID:ENSP00000501662
Original member Current member EBI ENST00000675159.1 ENSP00000501792.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675159.1Link to Ensembl Protein Viewer:ENSP00000501792.1Re-query CCDS DB by Nucleotide ID:ENST00000675159Re-query CCDS DB by Protein ID:ENSP00000501792
Original member Current member EBI ENST00000676172.1 ENSP00000501822.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676172.1Link to Ensembl Protein Viewer:ENSP00000501822.1Re-query CCDS DB by Nucleotide ID:ENST00000676172Re-query CCDS DB by Protein ID:ENSP00000501822
Original member Current member EBI ENST00000675835.1 ENSP00000501951.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675835.1Link to Ensembl Protein Viewer:ENSP00000501951.1Re-query CCDS DB by Nucleotide ID:ENST00000675835Re-query CCDS DB by Protein ID:ENSP00000501951
Original member Current member EBI ENST00000676458.1 ENSP00000501994.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676458.1Link to Ensembl Protein Viewer:ENSP00000501994.1Re-query CCDS DB by Nucleotide ID:ENST00000676458Re-query CCDS DB by Protein ID:ENSP00000501994
Original member Current member EBI ENST00000676264.1 ENSP00000502089.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676264.1Link to Ensembl Protein Viewer:ENSP00000502089.1Re-query CCDS DB by Nucleotide ID:ENST00000676264Re-query CCDS DB by Protein ID:ENSP00000502089
Original member Current member EBI ENST00000675384.1 ENSP00000502114.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675384.1Link to Ensembl Protein Viewer:ENSP00000502114.1Re-query CCDS DB by Nucleotide ID:ENST00000675384Re-query CCDS DB by Protein ID:ENSP00000502114
Original member Current member EBI ENST00000676348.1 ENSP00000502159.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676348.1Link to Ensembl Protein Viewer:ENSP00000502159.1Re-query CCDS DB by Nucleotide ID:ENST00000676348Re-query CCDS DB by Protein ID:ENSP00000502159
Original member Current member EBI ENST00000676374.1 ENSP00000502273.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676374.1Link to Ensembl Protein Viewer:ENSP00000502273.1Re-query CCDS DB by Nucleotide ID:ENST00000676374Re-query CCDS DB by Protein ID:ENSP00000502273
Original member Current member EBI ENST00000675293.1 ENSP00000502348.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675293.1Link to Ensembl Protein Viewer:ENSP00000502348.1Re-query CCDS DB by Nucleotide ID:ENST00000675293Re-query CCDS DB by Protein ID:ENSP00000502348
Original member Current member EBI ENST00000674976.1 ENSP00000502356.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674976.1Link to Ensembl Protein Viewer:ENSP00000502356.1Re-query CCDS DB by Nucleotide ID:ENST00000674976Re-query CCDS DB by Protein ID:ENSP00000502356
Original member Current member EBI ENST00000674874.1 ENSP00000502519.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674874.1Link to Ensembl Protein Viewer:ENSP00000502519.1Re-query CCDS DB by Nucleotide ID:ENST00000674874Re-query CCDS DB by Protein ID:ENSP00000502519
Original member Current member EBI ENST00000675054.1 ENSP00000502543.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675054.1Link to Ensembl Protein Viewer:ENSP00000502543.1Re-query CCDS DB by Nucleotide ID:ENST00000675054Re-query CCDS DB by Protein ID:ENSP00000502543
Original member Current member EBI ENST00000675315.1 ENSP00000502676.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675315.1Link to Ensembl Protein Viewer:ENSP00000502676.1Re-query CCDS DB by Nucleotide ID:ENST00000675315Re-query CCDS DB by Protein ID:ENSP00000502676
Original member Current member NCBI NM_001130067.2 NP_001123539.1 Accepted alive Link to Nucleotide Sequence:NM_001130067.2Link to Protein Sequence:NP_001123539.1Re-query CCDS DB by Nucleotide ID:NM_001130067Re-query CCDS DB by Protein ID:NP_001123539Link to BLAST:NP_001123539.1
Original member Current member NCBI NM_001375512.1 NP_001362441.1 Accepted alive Link to Nucleotide Sequence:NM_001375512.1Link to Protein Sequence:NP_001362441.1Re-query CCDS DB by Nucleotide ID:NM_001375512Re-query CCDS DB by Protein ID:NP_001362441Link to BLAST:NP_001362441.1
Original member Current member NCBI NM_001375513.1 NP_001362442.1 Accepted alive Link to Nucleotide Sequence:NM_001375513.1Link to Protein Sequence:NP_001362442.1Re-query CCDS DB by Nucleotide ID:NM_001375513Re-query CCDS DB by Protein ID:NP_001362442Link to BLAST:NP_001362442.1
Original member Current member NCBI NM_001375514.1 NP_001362443.1 Accepted alive Link to Nucleotide Sequence:NM_001375514.1Link to Protein Sequence:NP_001362443.1Re-query CCDS DB by Nucleotide ID:NM_001375514Re-query CCDS DB by Protein ID:NP_001362443Link to BLAST:NP_001362443.1
Original member Current member NCBI NM_001375515.1 NP_001362444.1 Accepted alive Link to Nucleotide Sequence:NM_001375515.1Link to Protein Sequence:NP_001362444.1Re-query CCDS DB by Nucleotide ID:NM_001375515Re-query CCDS DB by Protein ID:NP_001362444Link to BLAST:NP_001362444.1
Original member Current member NCBI NM_001375516.1 NP_001362445.1 Accepted alive Link to Nucleotide Sequence:NM_001375516.1Link to Protein Sequence:NP_001362445.1Re-query CCDS DB by Nucleotide ID:NM_001375516Re-query CCDS DB by Protein ID:NP_001362445Link to BLAST:NP_001362445.1
Original member Current member NCBI NM_001375517.1 NP_001362446.1 Accepted alive Link to Nucleotide Sequence:NM_001375517.1Link to Protein Sequence:NP_001362446.1Re-query CCDS DB by Nucleotide ID:NM_001375517Re-query CCDS DB by Protein ID:NP_001362446Link to BLAST:NP_001362446.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123539.1 744 Q9C040-1 744 100% 0 0
NP_001362441.1 744 Q9C040-1 744 100% 0 0
NP_001362442.1 744 Q9C040-1 744 100% 0 0
NP_001362443.1 744 Q9C040-1 744 100% 0 0
NP_001362444.1 744 Q9C040-1 744 100% 0 0
NP_001362445.1 744 Q9C040-1 744 100% 0 0
NP_001362446.1 744 Q9C040-1 744 100% 0 0

Chromosomal Locations for CCDS 47147.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 153270386 153270519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153275893 153276130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153292982 153293133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153294305 153294485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153295313 153296036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153315485 153315588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153315832 153315999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153322648 153322816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153324078 153324148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153328530 153328670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153334814 153334966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2235 nt):
ATGGCCAGTGAAGGCACCAACATCCCAAGTCCTGTGGTGCGCCAGATTGACAAGCAGTTTCTGATTTGCA
GTATATGCCTGGAACGGTACAAGAATCCCAAGGTTCTCCCCTGTCTGCACACTTTCTGCGAGAGGTGCCT
GCAGAACTACATTCCTGCCCACAGTTTAACCCTCTCCTGCCCAGTGTGCCGCCAGACCTCCATCCTGCCC
GAGAAAGGGGTGGCCGCGCTCCAGAACAATTTCTTCATCACAAACCTGATGGACGTGCTGCAGCGAACTC
CAGGCAGCAACGCTGAGGAGTCTTCCATCCTGGAGACAGTCACTGCTGTGGCTGCGGGAAAGCCTCTCTC
TTGCCCAAACCACGATGGGAATGTGATGGAATTTTACTGCCAGTCCTGTGAGACTGCCATGTGTCGGGAG
TGCACGGAGGGGGAGCACGCAGAGCACCCCACAGTTCCACTCAAGGATGTGGTGGAACAGCACAAGGCCT
CGCTCCAGGTCCAGCTGGATGCTGTCAACAAAAGGCTCCCAGAAATAGATTCTGCTCTTCAGTTCATCTC
TGAAATCATTCATCAGTTAACCAACCAAAAGGCCAGCATCGTGGATGACATTCATTCCACCTTTGATGAG
CTCCAGAAGACTTTAAATGTGCGCAAGAGTGTGCTGCTTATGGAATTGGAGGTCAACTATGGCCTCAAAC
ACAAAGTCCTCCAGTCGCAGCTGGATACTCTGCTCCAGGGGCAGGAGAGCATTAAGAGCTGCAGCAACTT
CACAGCGCAGGCCCTCAACCATGGCACGGAGACCGAGGTCCTACTGGTGAAGAAGCAGATGAGCGAGAAG
CTGAACGAGCTGGCCGACCAGGACTTCCCCTTGCACCCGCGGGAGAACGACCAGCTGGATTTCATCGTGG
AAACCGAGGGGCTGAAGAAGTCCATCCACAACCTCGGGACGATCTTAACCACCAACGCCGTTGCCTCAGA
GACAGTGGCCACGGGCGAGGGGCTGCGGCAGACCATCATCGGGCAGCCCATGTCCGTCACCATCACCACC
AAGGACAAAGACGGTGAGCTGTGCAAAACCGGCAACGCCTACCTCACCGCCGAACTGAGCACCCCCGACG
GGAGCGTGGCAGACGGGGAGATCCTGGACAACAAGAACGGCACCTATGAGTTTTTGTACACTGTCCAGAA
GGAAGGGGACTTTACCCTGTCTCTGAGACTCTATGACCAGCACATCCGAGGCAGCCCGTTTAAGCTGAAA
GTGATCCGATCCGCTGATGTGTCTCCCACCACAGAAGGCGTGAAGAGGCGCGTTAAGTCCCCGGGGAGCG
GCCACGTCAAGCAGAAAGCTGTGAAAAGACCCGCAAGCATGTACAGCACTGGAAAACGAAAAGAGAATCC
CATCGAAGACGATTTGATCTTTCGAGTGGGTACCAAAGGAAGAAATAAAGGAGAGTTTACAAATCTTCAG
GGGGTAGCTGCATCTACAAATGGAAAGATATTAATTGCAGACAGTAACAACCAATGTGTGCAGATATTTT
CCAATGATGGCCAGTTCAAAAGTCGTTTTGGCATACGGGGACGCTCTCCGGGGCAGCTGCAGCGGCCCAC
AGGAGTGGCTGTACATCCCAGTGGGGACATAATCATTGCCGATTATGATAATAAATGGGTCAGCATTTTC
TCCTCCGATGGGAAATTTAAGACAAAAATTGGATCAGGAAAGCTGATGGGACCCAAAGGAGTTTCTGTGG
ACCGCAATGGGCACATTATTGTTGTGGACAACAAGGCGTGCTGCGTGTTTATCTTCCAGCCAAACGGGAA
AATAGTCACCAGGTTTGGTAGCCGAGGAAATGGGGACAGGCAGTTTGCAGGTCCCCATTTTGCAGCTGTA
AATAGCAATAATGAGATTATTATTACAGATTTCCATAATCATTCTGTCAAGGTGTTTAATCAGGAAGGAG
AATTCATGTTGAAGTTTGGCTCAAATGGAGAAGGAAATGGGCAGTTTAATGCTCCAACAGGTGTAGCAGT
GGATTCAAATGGAAACATCATTGTGGCCGACTGGGGAAACAGCAGGATCCAGGTTTTTGATGGGAGTGGA
TCATTTTTGTCCTACATTAACACATCTGCTGACCCACTCTATGGCCCCCAAGGCCTGGCCCTAACTTCAG
ATGGTCATGTTGTGGTTGCAGACTCTGGAAATCACTGTTTCAAAGTCTATCGATACTTACAGTAA

Translation (744 aa):
MASEGTNIPSPVVRQIDKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQTSILP
EKGVAALQNNFFITNLMDVLQRTPGSNAEESSILETVTAVAAGKPLSCPNHDGNVMEFYCQSCETAMCRE
CTEGEHAEHPTVPLKDVVEQHKASLQVQLDAVNKRLPEIDSALQFISEIIHQLTNQKASIVDDIHSTFDE
LQKTLNVRKSVLLMELEVNYGLKHKVLQSQLDTLLQGQESIKSCSNFTAQALNHGTETEVLLVKKQMSEK
LNELADQDFPLHPRENDQLDFIVETEGLKKSIHNLGTILTTNAVASETVATGEGLRQTIIGQPMSVTITT
KDKDGELCKTGNAYLTAELSTPDGSVADGEILDNKNGTYEFLYTVQKEGDFTLSLRLYDQHIRGSPFKLK
VIRSADVSPTTEGVKRRVKSPGSGHVKQKAVKRPASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQ
GVAASTNGKILIADSNNQCVQIFSNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIF
SSDGKFKTKIGSGKLMGPKGVSVDRNGHIIVVDNKACCVFIFQPNGKIVTRFGSRGNGDRQFAGPHFAAV
NSNNEIIITDFHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQVFDGSG
SFLSYINTSADPLYGPQGLALTSDGHVVVADSGNHCFKVYRYLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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