NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47236.1 Public Homo sapiens 5 POC5 24 110 108 CCDS HistoryNCBI Gene:134359Re-query CCDS DB by CCDS ID:47236.1Re-query CCDS DB by GeneID:134359See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47236.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000428202.7 ENSP00000410216.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000428202.7Link to Ensembl Protein Viewer:ENSP00000410216.2Re-query CCDS DB by Nucleotide ID:ENST00000428202Re-query CCDS DB by Protein ID:ENSP00000410216
Original member Current member NCBI NM_001099271.2 NP_001092741.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099271.2Link to Protein Sequence:NP_001092741.1Re-query CCDS DB by Nucleotide ID:NM_001099271Re-query CCDS DB by Protein ID:NP_001092741Link to BLAST:NP_001092741.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092741.1 575 Q8NA72-1 575 100% 0 0

Chromosomal Locations for CCDS 47236.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 75674435 75674578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75677774 75677950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75685207 75685484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75689012 75689165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75690383 75690562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75692396 75692500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75694655 75694831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75702605 75702810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75705704 75705787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75707737 75707875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75712854 75712937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGTCATCAGATGAGGAGAAATACTCACTTCCAGTTGTGCAAAATGACTCCAGTCGAGGCAGTTCTGTCT
CTTCGAATCTTCAGGAAGAATATGAAGAACTGCTTCATTATGCTATAGTGACTCCAAATATTGAACCCTG
TGCTTCACAGTCATCTCATCCTAAGGGAGAATTGGTGCCAGATGTCAGAATTTCTACAATTCATGATATT
CTTCATAGTCAAGGAAATAACTCTGAAGTAAGAGAAACTGCAATAGAAGTTGGAAAAGGATGTGATTTCC
ATATTTCAAGTCATTCAAAGACAGATGAGTCATCACCAGTGTTATCGCCAAGGAAGCCTTCTCACCCAGT
CATGGATTTTTTCAGTTCACATCTTTTAGCTGACTCTTCCTCACCAGCAACAAATTCTAGTCATACAGAT
GCCCATGAAATACTTGTGAGCGATTTTCTTGTTTCTGATGAAAACCTTCAGAAGATGGAAAATGTGCTTG
ATCTTTGGAGTTCAGGTCTTAAGACAAACATCATATCTGAACTAAGTAAATGGAGACTTAATTTTATTGA
CTGGCACCGAATGGAAATGAGAAAAGAGAAAGAAAAACATGCAGCACATTTAAAACAACTGTGTAATCAG
ATCAATGAATTGAAGGAGCTGCAAAAAACCTTTGAAATCTCCATTGGGAGAAAAGATGAGGTGATTTCTA
GCTTGTCTCATGCCATAGGCAAGCAAAAGGAAAAGATAGAGTTGATGAGAACATTCTTCCACTGGCGAAT
CGGCCATGTCAGAGCCAGACAGGATGTTTATGAAGGTAAACTAGCTGACCAGTACTACCAGAGAACTTTA
CTGAAGAAAGTCTGGAAAGTCTGGCGTTCCGTAGTGCAAAAGCAGTGGAAAGATGTGGTAGAAAGAGCTT
GTCAAGCAAGAGCTGAAGAAGTTTGTATCCAGATTTCCAATGATTATGAAGCCAAAGTTGCTATGTTATC
TGGAGCTTTGGAAAATGCAAAAGCTGAGATTCAAAGAATGCAACATGAAAAAGAGCACTTTGAAGATTCC
ATGAAAAAAGCTTTCATGAGGGGTGTATGTGCATTAAATCTTGAAGCCATGACTATATTTCAAAACAGAA
ATGATGCAGGGATAGACTCCACAAATAATAAAAAGGAAGAGTATGGTCCTGGTGTTCAAGGAAAAGAACA
TTCTGCTCATTTGGATCCTTCAGCTCCTCCGATGCCCTTACCAGTTACATCACCACTGCTGCCATCCCCA
CCAGCCGCCGTCGGAGGAGCCAGCGCGACTGCCGTTCCCTCAGCTGCTTCGATGACTTCTACCAGGGCTG
CTTCCGCATCTTCTGTTCACGTTCCTGTTTCTGCTCTTGGTGCAGGATCTGCAGCTACTGCTGCATCAGA
AGAAATGTATGTGCCAAGAGTTGTAACCTCTGCACAACAGAAAGCAGGAAGAACTATTACAGCCCGGATC
ACAGGAAGATGTGATTTTGCTTCAAAAAATAGAATTAGCAGCAGTTTAGCTATAATGGGAGTTTCTCCTC
CCATGAGCTCAGTTGTTGTGGAAAAACATCATCCAGTCACAGTGCAAACCATTCCTCAAGCAACTGCAGC
AAAATATCCCCGGACCATTCATCCTGAAAGTAGTACCTCAGCTTCCAGATCACTTGGAACCAGATCAGCT
CACACCCAGTCTCTCACAAGTGTTCATTCCATAAAAGTGGTTGACTAA

Translation (575 aa):
MSSDEEKYSLPVVQNDSSRGSSVSSNLQEEYEELLHYAIVTPNIEPCASQSSHPKGELVPDVRISTIHDI
LHSQGNNSEVRETAIEVGKGCDFHISSHSKTDESSPVLSPRKPSHPVMDFFSSHLLADSSSPATNSSHTD
AHEILVSDFLVSDENLQKMENVLDLWSSGLKTNIISELSKWRLNFIDWHRMEMRKEKEKHAAHLKQLCNQ
INELKELQKTFEISIGRKDEVISSLSHAIGKQKEKIELMRTFFHWRIGHVRARQDVYEGKLADQYYQRTL
LKKVWKVWRSVVQKQWKDVVERACQARAEEVCIQISNDYEAKVAMLSGALENAKAEIQRMQHEKEHFEDS
MKKAFMRGVCALNLEAMTIFQNRNDAGIDSTNNKKEEYGPGVQGKEHSAHLDPSAPPMPLPVTSPLLPSP
PAAVGGASATAVPSAASMTSTRAASASSVHVPVSALGAGSAATAASEEMYVPRVVTSAQQKAGRTITARI
TGRCDFASKNRISSSLAIMGVSPPMSSVVVEKHHPVTVQTIPQATAAKYPRTIHPESSTSASRSLGTRSA
HTQSLTSVHSIKVVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH