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Report for CCDS47237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47237.1 Public Homo sapiens 5 POC5 24 110 108 CCDS HistoryNCBI Gene:134359Re-query CCDS DB by CCDS ID:47237.1Re-query CCDS DB by GeneID:134359See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47237.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000446329.6 ENSP00000399481.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446329.6Link to Ensembl Protein Viewer:ENSP00000399481.2Re-query CCDS DB by Nucleotide ID:ENST00000446329Re-query CCDS DB by Protein ID:ENSP00000399481
Original member Current member NCBI NM_152408.3 NP_689621.2 Accepted alive Link to Nucleotide Sequence:NM_152408.3Link to Protein Sequence:NP_689621.2Re-query CCDS DB by Nucleotide ID:NM_152408Re-query CCDS DB by Protein ID:NP_689621Link to BLAST:NP_689621.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689621.2 550 Q8NA72-3 550 100% 0 0

Chromosomal Locations for CCDS 47237.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 75674435 75674578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75677774 75677950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75685207 75685484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75689012 75689165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75690383 75690562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75692396 75692500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75694655 75694831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75702605 75702810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75705704 75705787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75707737 75707875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75712376 75712384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGAAGTGGGAAGAATATGAAGAACTGCTTCATTATGCTATAGTGACTCCAAATATTGAACCCTGTGCTT
CACAGTCATCTCATCCTAAGGGAGAATTGGTGCCAGATGTCAGAATTTCTACAATTCATGATATTCTTCA
TAGTCAAGGAAATAACTCTGAAGTAAGAGAAACTGCAATAGAAGTTGGAAAAGGATGTGATTTCCATATT
TCAAGTCATTCAAAGACAGATGAGTCATCACCAGTGTTATCGCCAAGGAAGCCTTCTCACCCAGTCATGG
ATTTTTTCAGTTCACATCTTTTAGCTGACTCTTCCTCACCAGCAACAAATTCTAGTCATACAGATGCCCA
TGAAATACTTGTGAGCGATTTTCTTGTTTCTGATGAAAACCTTCAGAAGATGGAAAATGTGCTTGATCTT
TGGAGTTCAGGTCTTAAGACAAACATCATATCTGAACTAAGTAAATGGAGACTTAATTTTATTGACTGGC
ACCGAATGGAAATGAGAAAAGAGAAAGAAAAACATGCAGCACATTTAAAACAACTGTGTAATCAGATCAA
TGAATTGAAGGAGCTGCAAAAAACCTTTGAAATCTCCATTGGGAGAAAAGATGAGGTGATTTCTAGCTTG
TCTCATGCCATAGGCAAGCAAAAGGAAAAGATAGAGTTGATGAGAACATTCTTCCACTGGCGAATCGGCC
ATGTCAGAGCCAGACAGGATGTTTATGAAGGTAAACTAGCTGACCAGTACTACCAGAGAACTTTACTGAA
GAAAGTCTGGAAAGTCTGGCGTTCCGTAGTGCAAAAGCAGTGGAAAGATGTGGTAGAAAGAGCTTGTCAA
GCAAGAGCTGAAGAAGTTTGTATCCAGATTTCCAATGATTATGAAGCCAAAGTTGCTATGTTATCTGGAG
CTTTGGAAAATGCAAAAGCTGAGATTCAAAGAATGCAACATGAAAAAGAGCACTTTGAAGATTCCATGAA
AAAAGCTTTCATGAGGGGTGTATGTGCATTAAATCTTGAAGCCATGACTATATTTCAAAACAGAAATGAT
GCAGGGATAGACTCCACAAATAATAAAAAGGAAGAGTATGGTCCTGGTGTTCAAGGAAAAGAACATTCTG
CTCATTTGGATCCTTCAGCTCCTCCGATGCCCTTACCAGTTACATCACCACTGCTGCCATCCCCACCAGC
CGCCGTCGGAGGAGCCAGCGCGACTGCCGTTCCCTCAGCTGCTTCGATGACTTCTACCAGGGCTGCTTCC
GCATCTTCTGTTCACGTTCCTGTTTCTGCTCTTGGTGCAGGATCTGCAGCTACTGCTGCATCAGAAGAAA
TGTATGTGCCAAGAGTTGTAACCTCTGCACAACAGAAAGCAGGAAGAACTATTACAGCCCGGATCACAGG
AAGATGTGATTTTGCTTCAAAAAATAGAATTAGCAGCAGTTTAGCTATAATGGGAGTTTCTCCTCCCATG
AGCTCAGTTGTTGTGGAAAAACATCATCCAGTCACAGTGCAAACCATTCCTCAAGCAACTGCAGCAAAAT
ATCCCCGGACCATTCATCCTGAAAGTAGTACCTCAGCTTCCAGATCACTTGGAACCAGATCAGCTCACAC
CCAGTCTCTCACAAGTGTTCATTCCATAAAAGTGGTTGACTAA

Translation (550 aa):
MKWEEYEELLHYAIVTPNIEPCASQSSHPKGELVPDVRISTIHDILHSQGNNSEVRETAIEVGKGCDFHI
SSHSKTDESSPVLSPRKPSHPVMDFFSSHLLADSSSPATNSSHTDAHEILVSDFLVSDENLQKMENVLDL
WSSGLKTNIISELSKWRLNFIDWHRMEMRKEKEKHAAHLKQLCNQINELKELQKTFEISIGRKDEVISSL
SHAIGKQKEKIELMRTFFHWRIGHVRARQDVYEGKLADQYYQRTLLKKVWKVWRSVVQKQWKDVVERACQ
ARAEEVCIQISNDYEAKVAMLSGALENAKAEIQRMQHEKEHFEDSMKKAFMRGVCALNLEAMTIFQNRND
AGIDSTNNKKEEYGPGVQGKEHSAHLDPSAPPMPLPVTSPLLPSPPAAVGGASATAVPSAASMTSTRAAS
ASSVHVPVSALGAGSAATAASEEMYVPRVVTSAQQKAGRTITARITGRCDFASKNRISSSLAIMGVSPPM
SSVVVEKHHPVTVQTIPQATAAKYPRTIHPESSTSASRSLGTRSAHTQSLTSVHSIKVVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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