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Report for CCDS47255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47255.1 Public Homo sapiens 5 NREP 24 110 108 CCDS HistoryNCBI Gene:9315Re-query CCDS DB by CCDS ID:47255.1Re-query CCDS DB by GeneID:9315See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47255.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395634.7 ENSP00000378996.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395634.7Link to Ensembl Protein Viewer:ENSP00000378996.3Re-query CCDS DB by Nucleotide ID:ENST00000395634Re-query CCDS DB by Protein ID:ENSP00000378996
Original member Current member NCBI NM_001142475.2 NP_001135947.1 Accepted alive Link to Nucleotide Sequence:NM_001142475.2Link to Protein Sequence:NP_001135947.1Re-query CCDS DB by Nucleotide ID:NM_001142475Re-query CCDS DB by Protein ID:NP_001135947Link to BLAST:NP_001135947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135947.1 112 Q16612-2 112 100% 0 0

Chromosomal Locations for CCDS 47255.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 111730921 111731046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111735430 111735507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111975274 111975378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111976710 111976739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (339 nt):
ATGAAAGGAGTTTGGAATTATTCTGCTTTGAGCCGAAGAGAAGATGAAACACGAACCCAGAGGAGCAGGA
TGACAGACAGAGTCCCTTGTTCCAAATGTTTCCAGGTTCACTGCCAGATTTCTGTTCTGAATTGTGTTTA
TTACCCAGAACTCTTTGTCTGGGTCAGTCAAGAACCATTTCCAAACAAGGACATGGAGGGAAGGCTTCCT
AAGGGAAGACTTCCTGTCCCAAAGGAAGTGAACCGCAAGAAGAACGATGAGACAAACGCTGCCTCCCTGA
CTCCACTGGGCAGCAGTGAACTCCGCTCCCCAAGAATCAGTTACCTCCACTTTTTTTAA

Translation (112 aa):
MKGVWNYSALSRREDETRTQRSRMTDRVPCSKCFQVHCQISVLNCVYYPELFVWVSQEPFPNKDMEGRLP
KGRLPVPKEVNRKKNDETNAASLTPLGSSELRSPRISYLHFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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