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Report for CCDS48059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48059.1 Public Homo sapiens 9 AJM1 24 110 108 CCDS HistoryNCBI Gene:389813Re-query CCDS DB by CCDS ID:48059.1Re-query CCDS DB by GeneID:389813See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48059.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000436881.3 ENSP00000412388.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000436881.3Link to Ensembl Protein Viewer:ENSP00000412388.1Re-query CCDS DB by Nucleotide ID:ENST00000436881Re-query CCDS DB by Protein ID:ENSP00000412388
Original member Current member NCBI NM_001080482.5 NP_001073951.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080482.5Link to Protein Sequence:NP_001073951.2Re-query CCDS DB by Nucleotide ID:NM_001080482Re-query CCDS DB by Protein ID:NP_001073951Link to BLAST:NP_001073951.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073951.2 976 C9J069 976 100% 0 0

Chromosomal Locations for CCDS 48059.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 136844415 136847345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2931 nt):
ATGACCCGTACGGACCCTCCGGACCTGCTGGTGTCGACCGTGTACCAGGACATCAAGGTGGCGACCCCGG
GA
CCCGCGTCCAAGTGCTCGCCATGTGAGCGATCCGTGGCCCGGCCTGCTGAGCCCGCGCCTTTCAACAA
G
CGCCACTGCCGCAGCTTCGACTTCCTGGAGGCGCTGGACGGGCCGGCCATGGAGACCCTGCCGGAGCCA
CCG
CCGCCGGAGTCCGCTGTGCCGCGCGCCCGGACCCGCGAAGCCGAGCCACGCCGCCGCGCCCGCTCCA
AG
AGTGCGCCCCGCGCGCCCCCGGGCCTGACGCCCGCGCCCGCCTCGCCGCCGGTGTTGCCCCGCCGAGG
G
CGGGAGGCCCAGCGTGCGGCGCGGGCCGAGGCATCGCCGCGCCGGGAGCCCGCGTACCCGGCGCTCCGC
GCC
CTTGCCAACGAGCTGCATCCCATCAAGTTGCAGCCGCAGCGGGGCGGCCCCGGCCGCGTCGCGCCCC
TG
TGCGCCGCCGCGGGCCGCTGCGCACCGCCCGAGCCACCCGCGGGTCCCGCCCCCCACGTGCGCTGCCG
C
CTGGACATCAAGCCAGACGACGCAGTGCTCCAGCACGCCACCCGGGGCTCGCGGTCCTGCGGGCCCACC
GAG
GCCGCGCACTGGGCCCGCCCCGCCCCGCAGTTCCACGGCCTCACGGTGCCCGGGCCCCGCCACATGG
CG
CTGTCGCGCACCCCGACGCCCAGCGACTCATACTGTGCGGATCCCCGGGCGTTCTACTGCGACGGGCC
C
CTGCCTGGGCCCCGGGACTACGCCGAGCGCCGCAGTCTGCCCTTCACCACCCCGCCGGGCCCCACCCAG
TTC
TTCTATACAGAGGAGCCCCAAGGCTTCCGGGGCAGCTTTGCAGCCAGTCCCGGCCCAACCTTCGACG
CC
TACTACCCCAGGCCCTATCCGTCCGAGGAGCTCTCGGGGCCCAGTCCAAGGCGCATGGGCGGCTACTA
C
GCAGGAGAGGTGCGCACCTTCCCAATCCAGGAACCGCCCTCCCGCTCCTACTATGGGGAGGCTCCACGA
GCC
TACGGCCTGCCCTACGGGCCCCGCTATGTCCCCGAGGAGCCCCGGGCCCACTCCACCGCCCGCCCCT
TT
TACACGGAGGACTTCGGAAGGTACCGCGAGCGTGACGTCCTGGCTCGGACGTACCCGCACCCGCGCAG
C
AGCCCGGCCTGGGCGGACTGGGGCCCGCGACCGTACCGCACCCTGCAAGTGGTGCCGCCCTCTGACCCC
GAC
CCGTTGCTCGCCTCCTGGCACGGCGGCACCGGCACCAGTCCGCCCCGGCTGGCCACCGACAGCCGCC
AC
TACTCGCGCTCCTGGGACAACATTCTGGCCCCGGGGCCGCGCCGAGAAGACCCGTTGGGCCGCGGCCG
C
AGCTACGAGAACCTGCTGGGGCGCGAGGTGCGGGAGCCGCGAGGCGTGTCCCCCGAAGGCCGGCGCCCG
CCC
GTCGTCGTGAACCTGTCCACCTCTCCCAGACGCTACGCCGCACTGTCCCTGTCCGAGACGTCGCTGA
CG
GAGAAGGGCCGCGCGGGCGAGGGCCTGGGCCGCAACTGGTACGTGACGCCCGAGATCACCATCACTGA
C
AATGACCTGCGCGCCACCGAGCGCCCGAGCGCCAGGGCCTGGGAGTTGCCCGGGGGCCGCACGCGGCCA
CCT
CCCCACGCGGCCCCCGACGGCCCCACCTCTGGCCGCCAGCGGAGCCTAGAGCAGCTGGACGAGCTCA
TC
ACGGACCTGGTCATCGACTCGCGACCCACCGCCGGCCAGGCCTCAGAGCCCGCGGCCGACTGCCTGGG
C
CCCCAACTGCGCCGACTGCTGGACTCGCGGCCCGCGGGCTCCGGGGCCCCCGCGCTGGCGCCGCCACGC
TCG
CCCCCCGCCTCGGCCGGCAGCGCCGAGGAGCCCGCGGCCCCGGGAGAGGCGGCCGACGCGTCCCCCG
AA
CCCAGCGCCGACGAGGACGACCTGATGACCTGCTCCAATGCGCGCTGCCGGCGCACCGAGACCATGTT
C
AACGCCTGCCTCTACTTCAAGTCCTGCCACAGCTGCTACACCTACTACTGCTCGCGCCTGTGCCGCCGC
GAG
GACTGGGACGCCCACAAGGCGCGCTGCGTGTACGGCCGCGTGGGCAGCGTGTGCCGCCACGTACTGC
AG
TTTTGCCGCGACAGCGGCCCGGTGCACCGCGCTTTCTCGCGCATCGCGCGTGTCGGCTTCCTGTCGCG
C
GGCCGCGGCGTGCTCTTCCTGGGCTTCCCAAGTCCAGGCTCGGCCGACAACTTCCTGCGCTTTGGCCTG
GAG
GGGCTGCTGCTATCCCCCACCTACCTATCGCTGCGTGAGCTGGCCACACACGCGGCGCCCCTGGGCA
GC
TACGCGCGCGAGCTGGCGGCCGCTGGGCGCCTCTACGAACCGGCAGAGTGCTTCCTGCTCAGCGTGTC
C
GTGGCCGTGGGACCCGGCACCGCGCCACCGGGGACACCGGCCCTGCCCGCGCCCGCGCCACGCAGCCAC
GGG
CCAACAGTGCGCAAGTTCGCCAAGGTAGCGCTGGCGGCCGGCAGCCCCGCGCGGCCGCCCCCGGCGC
GG
AGCCGCGAGCCCGACATGGAGACGCTGATCCTGACGCCACCGCCGGGCACGGCGGGCCTGGATCAGGA
C
GGCGAGGCGGGCCGGCGCGCGCGCGAGGTGGCCTTCATCCACATCCAGCGCGAGCTGCGGCTGCGCGGC
GTC
TTCCTGCGCCACGAGTTCCCGCGCGTCTACGAGCAGCTTTGCGAGTTCGTCGAGGCCAACAGGCGCT
TC
ACGCCCACCACCATCTACCCCACGGACCGGCGCACCGGCCGCCCCTTCATGTGCATGATCATGGCCGC
C
TCCGAGCCGCGCGCGCTCGACTGGGTGGCCAGCGCCAACCTGCTGGACGACATCATGTGA


Translation (976 aa):
MTRTDPPDLLVSTVYQDIKVATPGPASKCSPCERSVARPAEPAPFNKRHCRSFDFLEALDGPAMETLPEP
P
PPESAVPRARTREAEPRRRARSKSAPRAPPGLTPAPASPPVLPRRGREAQRAARAEASPRREPAYPALR
A
LANELHPIKLQPQRGGPGRVAPLCAAAGRCAPPEPPAGPAPHVRCRLDIKPDDAVLQHATRGSRSCGPT
E
AAHWARPAPQFHGLTVPGPRHMALSRTPTPSDSYCADPRAFYCDGPLPGPRDYAERRSLPFTTPPGPTQ
F
FYTEEPQGFRGSFAASPGPTFDAYYPRPYPSEELSGPSPRRMGGYYAGEVRTFPIQEPPSRSYYGEAPR
A
YGLPYGPRYVPEEPRAHSTARPFYTEDFGRYRERDVLARTYPHPRSSPAWADWGPRPYRTLQVVPPSDP
D
PLLASWHGGTGTSPPRLATDSRHYSRSWDNILAPGPRREDPLGRGRSYENLLGREVREPRGVSPEGRRP
P
VVVNLSTSPRRYAALSLSETSLTEKGRAGEGLGRNWYVTPEITITDNDLRATERPSARAWELPGGRTRP
P
PHAAPDGPTSGRQRSLEQLDELITDLVIDSRPTAGQASEPAADCLGPQLRRLLDSRPAGSGAPALAPPR
S
PPASAGSAEEPAAPGEAADASPEPSADEDDLMTCSNARCRRTETMFNACLYFKSCHSCYTYYCSRLCRR
E
DWDAHKARCVYGRVGSVCRHVLQFCRDSGPVHRAFSRIARVGFLSRGRGVLFLGFPSPGSADNFLRFGL
E
GLLLSPTYLSLRELATHAAPLGSYARELAAAGRLYEPAECFLLSVSVAVGPGTAPPGTPALPAPAPRSH
G
PTVRKFAKVALAAGSPARPPPARSREPDMETLILTPPPGTAGLDQDGEAGRRAREVAFIHIQRELRLRG
V
FLRHEFPRVYEQLCEFVEANRRFTPTTIYPTDRRTGRPFMCMIMAASEPRALDWVASANLLDDIM




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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