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Report for CCDS48083.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48083.2 Public Homo sapiens X TRAPPC2 24 110 108 CCDS HistoryNCBI Gene:6399Re-query CCDS DB by CCDS ID:48083.2Re-query CCDS DB by GeneID:6399See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 48083.1
The coding region has been updated to extend the N-terminus, and to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 48083.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000683983.1 ENSP00000507474.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683983.1Link to Ensembl Protein Viewer:ENSP00000507474.1Re-query CCDS DB by Nucleotide ID:ENST00000683983Re-query CCDS DB by Protein ID:ENSP00000507474
Original member Current member NCBI NM_001128835.3 NP_001122307.2 Accepted alive Link to Nucleotide Sequence:NM_001128835.3Link to Protein Sequence:NP_001122307.2Re-query CCDS DB by Nucleotide ID:NM_001128835Re-query CCDS DB by Protein ID:NP_001122307Link to BLAST:NP_001122307.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122307.2 174 P0DI81-3 174 100% 0 0

Chromosomal Locations for CCDS 48083.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 13714407 13714505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 13716004 13716089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 13716534 13716678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 13719871 13719982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 13734050 13734132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGTCCTCTTGGAAGCAAGATCGCTCCGGGTTGAGATCCACAGAGCTAAACGTTTTAGAGTACCAACCAT
TGTGTGCTGTGAGGAGCCATATATTGAAGACCATGTCTGGGAGCTTCTACTTTGTAATTGTTGGCCACCA
TGATAATCCAGTTTTTGAAATGGAGTTTTTGCCAGCTGGGAAGGCAGAATCCAAAGACGACCATCGTCAT
CTGAACCAGTTCATAGCTCATGCTGCTCTCGACCTCGTAGATGAGAACATGTGGCTATCGAACAACATGT
ACTTGAAAACTGTGGACAAGTTCAACGAGTGGTTTGTGTCGGCATTTGTCACTGCGGGGCATATGAGGTT
TATTATGCTTCATGACATAAGACAAGAAGATGGAATAAAGAACTTCTTTACTGATGTTTATGATTTATAT
ATAAAGTTTTCAATGAATCCATTTTATGAACCCAATTCTCCTATTCGATCAAGTGCATTTGACAGAAAAG
TTCAGTTTCTTGGGAAGAAACACCTTTTAAGCTGA

Translation (174 aa):
MSSWKQDRSGLRSTELNVLEYQPLCAVRSHILKTMSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRH
LNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLY
IKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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