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Report for CCDS48107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48107.1 Public Homo sapiens X MAGIX 24 110 108 CCDS HistoryNCBI Gene:79917Re-query CCDS DB by CCDS ID:48107.1Re-query CCDS DB by GeneID:79917See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48107.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000615626.4 ENSP00000479023.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615626.4Link to Ensembl Protein Viewer:ENSP00000479023.1Re-query CCDS DB by Nucleotide ID:ENST00000615626Re-query CCDS DB by Protein ID:ENSP00000479023
Original member Current member NCBI NM_001099681.2 NP_001093151.2 Accepted alive Link to Nucleotide Sequence:NM_001099681.2Link to Protein Sequence:NP_001093151.2Re-query CCDS DB by Nucleotide ID:NM_001099681Re-query CCDS DB by Protein ID:NP_001093151Link to BLAST:NP_001093151.2

Chromosomal Locations for CCDS 48107.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 49162890 49162938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49163783 49163929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49164707 49164789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49165190 49165361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49166074 49166399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGGAGCCGCGCACAGGGGACGCCGCGGACCCTAGGGGGAGCAGAGGAGGCCGCGGCCCCTCCCCGCTCG
CGGGCCCTAGCGCCCGGCAGCTCCTGGCGCGGTTGGACGCGCGCCCCCTGGCGGCGCGAGCTGCGGTCGA
CGTGGCAGCGCTGGTACGCAGGGCGGGCGCCACATTGCGCCTGCGCCGGAAGGAGGCTGTTAGCGTGCTG
GACTCTGCGGACATAGAGGTCACAGACAGTCGCCTGCCTCATGCCACTATTGTGGATCACCGGCCCCAGG
TCGGGGACCTCGTGCTCCACATCAACGGAGAGTCAACGCAGGGCCTCACCCATGCCCAGGCCGTGGAGCG
GATCCGAGCTGGAGGCCCCCAGCTCCACCTGGTTATTCGTCGGCCTCTGGAGACCCACCCTGGCAAGCCT
CGAGGGGTGGGAGAGCCCCGAAAAGGAGTTGTCCCGTCATGGCCAGATCGCAGCCCAGATCCTGGAGGGC
CGGAGGTAACGGGGTCTCGCAGCAGCAGCACTTCCCTAGTTCAGCACCCTCCATCCCGGACGACGCTCAA
GAAGACCCGGGGCAGCCCGGAGCCTAGTCCAGAGGCGGCCGCCGATGGCCCCACGGTTTCTCCTCCTGAG
CGCCGCGCTGAGGATCCCAACGACCAGATCCCGGGTTCCCCGGGGCCCTGGCTAGTGCCCAGCGAGGAAC
GGCTCTCGCGGGCCCTAGGGGTCCGGGGGGCAGCGCAGCTCGCTCAGGAGATGGCAGCCGGAAGGCGGAG
ACACTGA

Translation (258 aa):
MEPRTGDAADPRGSRGGRGPSPLAGPSARQLLARLDARPLAARAAVDVAALVRRAGATLRLRRKEAVSVL
DSADIEVTDSRLPHATIVDHRPQVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLETHPGKP
RGVGEPRKGVVPSWPDRSPDPGGPEVTGSRSSSTSLVQHPPSRTTLKKTRGSPEPSPEAAADGPTVSPPE
RRAEDPNDQIPGSPGPWLVPSEERLSRALGVRGAAQLAQEMAAGRRRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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