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Report for CCDS48225.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48225.1 Under review, update Mus musculus 1 Pi15 23 108 98 CCDS HistoryNCBI Gene:94227Re-query CCDS DB by CCDS ID:48225.1Re-query CCDS DB by GeneID:94227See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 48225.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088476.3 ENSMUSP00000085826.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088476.3Link to Ensembl Protein Viewer:ENSMUSP00000085826.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000088476Re-query CCDS DB by Protein ID:ENSMUSP00000085826
Original member NCBI NM_053191.2 NP_444421.2 Updated not alive Link to Nucleotide Sequence:NM_053191.2Link to Protein Sequence:NP_444421.2Re-query CCDS DB by Nucleotide ID:NM_053191Re-query CCDS DB by Protein ID:NP_444421
NCBI NM_053191.3 NP_444421.2 Updated not alive Link to Nucleotide Sequence:NM_053191.3Link to Protein Sequence:NP_444421.2Re-query CCDS DB by Nucleotide ID:NM_053191Re-query CCDS DB by Protein ID:NP_444421
NCBI NM_053191.4 NP_444421.3 Updated not alive Link to Nucleotide Sequence:NM_053191.4Link to Protein Sequence:NP_444421.3Re-query CCDS DB by Nucleotide ID:NM_053191Re-query CCDS DB by Protein ID:NP_444421
Current member NCBI NM_053191.5 NP_444421.3 Pending alive Link to Nucleotide Sequence:NM_053191.5Link to Protein Sequence:NP_444421.3Re-query CCDS DB by Nucleotide ID:NM_053191Re-query CCDS DB by Protein ID:NP_444421Link to BLAST:NP_444421.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444421.3 258 Q8BS03 258 100% 0 0

Chromosomal Locations for CCDS 48225.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 17602579 17602884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17619783 17619901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17621401 17621533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17621647 17621762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17624835 17624970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGCAAAGCTGGAGGACTTCTCCATCCCTGAAAATGATAATGAACTCTGCAGTCAGCCTTGTGATTCTTT
TGTCCCTTCTCTGTGAAGCACATACTGTCGTTTTACTAAATCCCACTGACTCATCTCTGCCAGCCAATAA
CTTCACTGATACTGAAGCCGCCCTCAGCACACCACTAGAGTCTGCGGATATCCCCAAAGCCAGGCGGAAG
CGTTACATTTCTCAGAATGACATGATCGCCATTCTCGATTATCATAATCAAGTCCGGGGCAAAGTGTTCC
CACCAGCAGCAAACATGGAATATATGGTCTGGGATGAAAATCTTGCAAAATCGGCTGAGGCATGGGCAGC
AACTTGCATTTGGGACCATGGACCTTCTTATTTGCTGAGATTTTTGGGTCAGAATTTGTCTGTACGAACT
GGAAGATATCGCTCTATCCTCCAGTTGGTCAAGCCATGGTATGATGAAGTCAAAGATTATGCCTTTCCTT
ACCCTCAGGACTGCAACCCTCGGTGTCCCATGCGATGCTTTGGGCCCATGTGCACTCATTATACACAGAT
GGTTTGGGCCACTTCTAATCGAATAGGATGTGCAATTCACACTTGCCAAAACATGAACGTCTGGGGATCT
GTGTGGCGAAGAGCAGTGTACTTGGTGTGCAACTATGCTCCAAAGGGTAACTGGATAGGAGAAGCACCAT
ACAAAGTTGGAGTGCCATGTTCATCGTGTCCTCCAAGTTATGGTGGAGCCTGTACTGACAATCTGTGCTT
TCCAGGGGTAACCACAAACTACCTGTACTGGTTTAAATAA

Translation (269 aa):
MQSWRTSPSLKMIMNSAVSLVILLSLLCEAHTVVLLNPTDSSLPANNFTDTEAALSTPLESADIPKARRK
RYISQNDMIAILDYHNQVRGKVFPPAANMEYMVWDENLAKSAEAWAATCIWDHGPSYLLRFLGQNLSVRT
GRYRSILQLVKPWYDEVKDYAFPYPQDCNPRCPMRCFGPMCTHYTQMVWATSNRIGCAIHTCQNMNVWGS
VWRRAVYLVCNYAPKGNWIGEAPYKVGVPCSSCPPSYGGACTDNLCFPGVTTNYLYWFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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