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Report for CCDS48276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48276.1 Public Mus musculus 1 Pard3b 23 108 98 CCDS HistoryNCBI Gene:72823Re-query CCDS DB by CCDS ID:48276.1Re-query CCDS DB by GeneID:72823See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075374.9 ENSMUSP00000074837.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075374.9Link to Ensembl Protein Viewer:ENSMUSP00000074837.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000075374Re-query CCDS DB by Protein ID:ENSMUSP00000074837
Original member NCBI NM_001081050.2 NP_001074519.2 Updated not alive Link to Nucleotide Sequence:NM_001081050.2Link to Protein Sequence:NP_001074519.2Re-query CCDS DB by Nucleotide ID:NM_001081050Re-query CCDS DB by Protein ID:NP_001074519
Current member NCBI NM_001081050.3 NP_001074519.2 Accepted alive Link to Nucleotide Sequence:NM_001081050.3Link to Protein Sequence:NP_001074519.2Re-query CCDS DB by Nucleotide ID:NM_001081050Re-query CCDS DB by Protein ID:NP_001074519Link to BLAST:NP_001074519.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074519.2 1203 Q9CSB4-1 1203 100% 0 0

Chromosomal Locations for CCDS 48276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 61639243 61639362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 61767948 61768049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62010307 62010478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62076385 62076494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62144847 62144935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62153933 62154019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62159435 62159560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62161110 62161468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62164080 62164219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62166354 62166482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62198577 62198762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62211534 62211704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62216423 62216555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62230179 62230278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62238837 62238952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62275883 62275927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62343934 62344140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62344870 62345107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62440011 62440121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62479499 62479795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62532645 62532780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62587737 62587816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 62637566 62637923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3612 nt):
ATGAAAGTGACAGTGTGCTTCGGGAGGACGGGCATCGTGGTGCCCTGCAAGGACGGCCAGCTCCGGGTCC
GCGAGCTCACCCAGCAGGCGCTGCAGCGGTACCTGAAGACCCGGGACCAGGATCCTGGATACTGGGTGAA
GATTCATCACTTAGAATACACAGATGGAGGAATCCTGGATCCGGATGATGTCTTAGCAGATGTTGTTGAA
GACAAAGATAAGCTGATTGCTGTGTTTGACGAACAAGAGCCACTCCAAAAGACTGAGAGCCCCGGTGGAA
ACCCTGCGGATCGGCAGAGCCCAGATGCTTTCGAGACAGAAGTGGCTGCCCAACTGGCTGCATTTAAACC
TGTCGGTGGGGAAATCGTAGTAACCCCTTCTGCTCTGAAGTTAGGCACTCCACTGCTGGTTAGGAGAAGC
AGTGACCCAGCACCAGGGCCCCATGCTGATGCCCAGCCAAGCACTGCAAGCCTGAGTGGCCAGAGTTTGA
AACCTGTTGTTCTGGATTCCACCCAGAACGTGGAAAACAAAGAAGCTATGAATGGTGAACAGGCAGGGCT
GCTTTCACTGCACAGACCGAAGGATGAGCTGAGTGATATGACGAGAGCTGTGGAGATTTCTGGGGAAGGA
GACCCCCTGGGGATCCACGTGGTGCCCTTCTTTTCATCCCTGAGTGGCCGGATCCTAGGACTCTTCATCC
GAGGCATTGAAGAAAACAGCAGGTGCAAGCAGGAGGGACTATTTCAGGAGAATGAGTGCATTGTAAAAAT
CAACAATGTGGAACTCCTGGACAAAACTTTTGCTCAGGCCCAAGATGTCTTCCGCCAGGCAATGAAATCT
CCCAGTGTGATTCTCCATGTGCTTCTGCCTCAAAACCGTGAACAATATGAAAAATCAGTCATTGGACCAC
TCAACATTTTTGGCAACAATGATGGGGCTTCGAGAACAAAGGCAGCACCTCCTGCCCGTGGGAAACCAGG
TCTGAAGGCAGTACATCTAACAAGAGCGAGCAGCCCTGAAGGAGAAGAGCCAGCCTCCCCGCAGCAAAGC
AAGAGTCCCCGGGTTCCAAGACTAGGAAGAAAACCTTCCTCTCCCTCACTCTCTCCTCTCATGGGGTTTG
GCAGCAAGAAAAATGCAAAAAAAATTAAGATTGACCTAAAGAAAGGCCCTGAGGGACTTGGTTTCACTGT
GGTAACCAGAGATTCTTCTATACATGGTCCTGGTCCCATTTTTGTAAAAAACATCTTACCAAAAGGAGCA
GCAGTAAAGGATGGCCGCCTACAATCAGGGGACAGAATTTTGGAGGTAAATGGCAGAGATGTTACAGGAA
GAACCCAAGAAGAACTCGTGGCCATGTTAAGGAGCACCAAGCAGGGAGAGACAGTGTCATTGGTCATTGC
CCGCCAGGAAGGGAGCTTCCTGCCCCGAGAGCTGAAAGGAGAACCTGATTGTTATGCTCTCTCCCTGGAG
TCAAGCGAGCAGCTCACCTTGGAGATCCCCCTGAATGATTCTGGCTCCGCTGGCCTGGGGGTTAGCCTGA
AAGGGAATAAGTCTCGAGAAACTGGAACTGACTTGGGGATTTTTATCAAATCCATCATCCATGGAGGTGC
TGCTTTCAAGGATGGCCGTCTCCGAATGAATGACCAACTGATTGCTGTTAACGGGGAAACTCTTCTGGGA
AAGTCCAACCACGAAGCCATGGAAACACTCAGGCGATCCATGTCCATGGAGGGAAACATCCGGGGCATGA
TCCAGTTGGTGATTCTGAGGAGACCTGAGAGACCACTGGAGGAGCTTTCAGAATGTGGAGCACTTTCCAG
ACCAGGCTTTGAGAACTGTCAAGAAGCTCTGAGCACCTCCAGGCGAAATGATAGTAGTATATTATATCCG
TTTGGCACCTATAGTCCACAAGATAAAAGGAAAGACCTATTGCTTCCCAGTGATGGGTGGGCTGAGAATG
AAGTACCACCGTCCCCGCCACCACATCCTGCTCTGGAATGGGGCCTTGAAGATTTCAGTCACAGCTCTGG
AGTGGATTCCACAGGATATTTTCCAGATCAACATGTCAACTTCAGAACGGTGACACCAGTCAGGCAGCCC
GAATTGATTAACCTTAAAGCCTCCAAGAGCATGGACCTTGTGCCAGATGAAGGCAAAGTTCAGTCGCTGG
CGGATCGCAGATCAGACTCTCCAGGCAAAGATTTTGGTCCAACTTTGGGTCTGAAAAAGTCCAGTTCCTT
GGAGAGCCTACAGACGGCTGTGGCTGAAGTCAGGAAGAATGATCTGCCCTTCCACAGGCCCAGACCACAC
ATGGTGCGGGGCCGAGGCTGCAACGAGAGCTTCCGAGCAGCCATCGACAAATCGTACGATGGGCCAGAAG
AGGCAGACGCGGATGGTCTGTCTGATAAGAGCTCTCGCTCAGGCCACACAGCTCTGAATTGTGAGTCTGC
CCCTCAGGGAAACCCCGAGCTAGACAATGTGGAAAATAAAGCCAAAAACATCAAAAAAACAAAAGAGAAG
GAGAAGAAAAAAGGAAAGGGCAAGCTGAAAGTCAAGGAAAAAAAGCTGAAGGAGGAACATGAGGACGCAG
AGAGGAAAATGAAGAGGAAGGGCTTCGGTGCCATGCTGAGATTTGGAAAGAAGAAAGATGATAAGGTCGG
AAAGGCTGAGCAGAAAGGTGCGCAGAAGTCCGGCCACCCGGAGGAAGAGGAGCTGGAAAGAATGAAAGAA
GAGAGAGAGAGGATTGGAGCAAAACATCAGGAGCTGAGAGAAAAGCAGGCAAGAGGCCTTGTTGATTATG
CCACGGCAGTGACTGGACCAGTGCACGATATGGACGATGACGAAATGGACCCCAATTATGCCAGAGTGAA
CCACTTTCGGGAACCATGTGCATCAGCAAATGTCTTTAGATCTCCATCTCCCCTTCGAGCTGGACCACTT
GCTTACCCTCGGGATGGGCGTCCACTGTCTCCAGACCACTTAGAGGGTCTCTATGCCAAGGTCAACAAGC
CATATCATCCACCAGCCCTAGCTGACAGTGGCCGACCCATGGCTGGAACCACGGACCGCATCCAGAAGCT
TCGGAAGGAGTATTACCAGGCTCGGAGAGAAGGGTTCCTTTTGTATGAAGATGAAAACACAAGAGCACGG
CCATCTGACCATGACCTCCGCTGGGTGTCTGGAAAGGGTCCAGATGGGAGCACACACAACCTCCGCTTTG
AGGGGATGGAGCGGCAGTACGCATCCTTACCCAGGGGAGGCTCAGCAGATCCCGTGGACTACCTGACAGC
TTCACCCCGAGGGCGCTACAATGACAGAGAGCTTCCATACTACCCAGGGCCTCATCCTGTACATGCCCCA
AGGGGGAGCTATCCCCGCCCCCCAGATCTGAGGGCAACAGATCTACGATACCCACAGTACTACCCACCCC
CACCAGCCCATCAGCACAAAGGGCCCTTCAGACAAGATGTTCCTCCTTCACCACCTCAGCACCAGCGAGT
ACCGGTCTACCAGGAGATGGGCAGAGCAGGGCCCCGAGGGAGCAGCCCTGACCAATACCCCTATCGTAAC
CAGGATCCCAGGCAGAAGAATCCCATGACTGCAGCGGTATAG

Translation (1203 aa):
MKVTVCFGRTGIVVPCKDGQLRVRELTQQALQRYLKTRDQDPGYWVKIHHLEYTDGGILDPDDVLADVVE
DKDKLIAVFDEQEPLQKTESPGGNPADRQSPDAFETEVAAQLAAFKPVGGEIVVTPSALKLGTPLLVRRS
SDPAPGPHADAQPSTASLSGQSLKPVVLDSTQNVENKEAMNGEQAGLLSLHRPKDELSDMTRAVEISGEG
DPLGIHVVPFFSSLSGRILGLFIRGIEENSRCKQEGLFQENECIVKINNVELLDKTFAQAQDVFRQAMKS
PSVILHVLLPQNREQYEKSVIGPLNIFGNNDGASRTKAAPPARGKPGLKAVHLTRASSPEGEEPASPQQS
KSPRVPRLGRKPSSPSLSPLMGFGSKKNAKKIKIDLKKGPEGLGFTVVTRDSSIHGPGPIFVKNILPKGA
AVKDGRLQSGDRILEVNGRDVTGRTQEELVAMLRSTKQGETVSLVIARQEGSFLPRELKGEPDCYALSLE
SSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLG
KSNHEAMETLRRSMSMEGNIRGMIQLVILRRPERPLEELSECGALSRPGFENCQEALSTSRRNDSSILYP
FGTYSPQDKRKDLLLPSDGWAENEVPPSPPPHPALEWGLEDFSHSSGVDSTGYFPDQHVNFRTVTPVRQP
ELINLKASKSMDLVPDEGKVQSLADRRSDSPGKDFGPTLGLKKSSSLESLQTAVAEVRKNDLPFHRPRPH
MVRGRGCNESFRAAIDKSYDGPEEADADGLSDKSSRSGHTALNCESAPQGNPELDNVENKAKNIKKTKEK
EKKKGKGKLKVKEKKLKEEHEDAERKMKRKGFGAMLRFGKKKDDKVGKAEQKGAQKSGHPEEEELERMKE
ERERIGAKHQELREKQARGLVDYATAVTGPVHDMDDDEMDPNYARVNHFREPCASANVFRSPSPLRAGPL
AYPRDGRPLSPDHLEGLYAKVNKPYHPPALADSGRPMAGTTDRIQKLRKEYYQARREGFLLYEDENTRAR
PSDHDLRWVSGKGPDGSTHNLRFEGMERQYASLPRGGSADPVDYLTASPRGRYNDRELPYYPGPHPVHAP
RGSYPRPPDLRATDLRYPQYYPPPPAHQHKGPFRQDVPPSPPQHQRVPVYQEMGRAGPRGSSPDQYPYRN
QDPRQKNPMTAAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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