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Report for CCDS48331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48331.1 Public Mus musculus 1 Pam 23 108 98 CCDS HistoryNCBI Gene:18484Re-query CCDS DB by CCDS ID:48331.1Re-query CCDS DB by GeneID:18484See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48331.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097625.9 ENSMUSP00000095228.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097625.9Link to Ensembl Protein Viewer:ENSMUSP00000095228.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097625Re-query CCDS DB by Protein ID:ENSMUSP00000095228
Original member NCBI NM_013626.3 NP_038654.2 Updated not alive Link to Nucleotide Sequence:NM_013626.3Link to Protein Sequence:NP_038654.2Re-query CCDS DB by Nucleotide ID:NM_013626Re-query CCDS DB by Protein ID:NP_038654
Current member NCBI NM_013626.4 NP_038654.2 Accepted alive Link to Nucleotide Sequence:NM_013626.4Link to Protein Sequence:NP_038654.2Re-query CCDS DB by Nucleotide ID:NM_013626Re-query CCDS DB by Protein ID:NP_038654Link to BLAST:NP_038654.2

Chromosomal Locations for CCDS 48331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 97821810 97821988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97822936 97822989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97825837 97826037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97831455 97831508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97834408 97834516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97837963 97838078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97840280 97840480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97840699 97840909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97842232 97842304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97844596 97844712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97853103 97853232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97864203 97864520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97884126 97884197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97885602 97885786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97894361 97894464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97895632 97895708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97895969 97896049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97897208 97897275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97898341 97898389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97923094 97923177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97924431 97924516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97934651 97934738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97944620 97944677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97975785 97975905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97976857 97976957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2937 nt):
ATGGCCGGACGCGCCCGCAGCCGCCTGCTGCTGCTGCTGGGGCTGCTCGCCTTGCAGAGCAGCTGCCTGG
CCTTCAGAAGCCCACTTTCTGTCTTTAAGAGGTTTAAAGAAACTACCAGATCATTTTCCAATGAATGCCT
TGGTACCACCAGACCCATCACTCCTATTGATTCTTCGGATTTTACACTGGATATTCGCATGCCTGGGGTC
ACACCTAAAGAGTCTGACACGTACTTCTGCATGTCCATGCGTCTGCCTGTGGATGAGGAAGCCTTCGTGA
TTGACTTCAAGCCTCGGGCCAGCATGGACACTGTCCACCATATGCTGCTGTTTGGATGCAACATGCCCTC
ATCCACTGGGAGTTACTGGTTTTGTGATGAAGGAACCTGTACAGATAAAGCCAATATTCTATATGCCTGG
GCAAGAAATGCTCCCCCCACCCGGCTCCCTAAAGGTGTTGGATTCAGAGTTGGAGGGGAAACTGGAAGCA
AATACTTCGTCCTTCAAGTTCACTATGGGGACATCAGTGCTTTTCGAGATAATCACAAAGACTGTTCCGG
TGTGTCCTTACATCTCACACGTGTGCCACAGCCTTTGATTGCGGGCATGTACCTTATGATGTCTGTCAAC
ACTGTTATACCCCCAGGAGAGAAAGTAGTGAATTCTGACATTTCGTGCCATTACAAAATGTATCCAATGC
ATGTGTTTGCCTACCGAGTCCATACTCACCATTTAGGTAAGGTAGTGAGTGGATACAGAGTAAGAAACGG
ACAGTGGACGCTGATTGGACGCCAGAGCCCCCAGCTGCCACAGGCTTTTTACCCAGTGGAACACCCAGTA
GATGTTGCTTTTGGTGATATACTGGCAGCCAGATGTGTGTTCACTGGTGAGGGGAGGACCGAAGCCACCC
ACATCGGCGGCACATCTAGTGATGAAATGTGCAACTTGTACATTATGTATTACATGGAAGCCAAGCATGC
AGTTTCCTTCATGACCTGTACACAGAATGTGGCTCCAGATATGTTCAGAACTATCCCAGAAGAGGCCAAT
ATTCCAATTCCTGTAAAATCCGACATGGTTATGATCCATGGGCATCACAAAGAAACAGAAAACAAAGAAA
AGAGTGCTTTAATACAGCAGCCAAAGCAGGGAGAGGAGGAAGCCTTCGAGCAGGGTGATTTCTATTCACT
ACTTTCCAAGCTGCTAGGAGAAAGGGAAGATGTTGTTCATGTGCACAAATATAATCCTACAGAAAAGACA
GAATCTGGGTCAGACCTGGTAGCTGAGATTGCAAACGTAGTCCAGAAAAAGGACCTTGGTCGGTCTGACG
CCAGAGAGGGAGCGGAGCATGAGGAAGGGGGTAATGCTATCCTGGTCAGAGACAGGATCCACAAATTCCA
CAGGCTAGAGTCAACCTTGAGGCCAGCTGAGAGCAGAGCTCTATCCTTCCAGCAGCCTGGTGAAGGTCCT
TGGGAACCAGAACTCGCAGGAGATTTCCATGTGGAAGAAGCACTGGAGTGGCCTGGAGTGTACTTGTTAC
CAGGCCAGGTTTCTGGGGTGGCCCTGGATTCTAAGAATAACCTTGTGATTTTCCACAGAGGTGACCATGT
TTGGGATGGAAACTCTTTTGACAGCAAGTTCGTTTACCAACAAAGAGGTCTTGGACCAATTGAAGAAGAT
ACCATCCTGGTCATTGACCCAAATAAAGCTGAAATACTCCAGTCCAGCGGCAAGAATCTGTTTTATTTAC
CGCATGGTTTGAGCATAGATACAGATGGAAATTATTGGGTCACGGATGTGGCTCTCCATCAGGTGTTCAA
ATTGGAACCACGTAGCAAAGAAGGCCCTCTCTTAGTTCTGGGAAGGAGCATGCAACCTGGCAGCGACCAA
AATCATTTCTGCCAGCCCACTGATGTGGCGGTGGAGCCCAGTACTGGAGCTGTCTTCGTGTCAGATGGTT
ACTGCAACAGTCGGATCGTGCAGTTCTCACCAAGCGGGAAGTTCATCACTCAGTGGGGAGAAGAGTCTTC
TGGGAGCAGTCCTAAGCCAGGGCAGTTCAGTGTTCCTCACAGTTTGGCCCTTGTGCCTCACCTGAACCAG
TTGTGTGTGGCCGATAGGGAAAATGGCCGGATCCAGTGTTTCAAGACTGACACCAAAGAATTTGTGAGAG
AGATTAAGCATGCGTCATTTGGAAGGAATGTCTTTGCAATCTCATATATACCAGGTTTCCTCTTTGCAGT
AAATGGGAAGCCTTACTTTGGAGACCAAGAACCCGTGCAAGGATTTGTGATGAACTTTTCCAGTGGGGAA
ATTATAGATGTTTTCAAACCAGTTCGCAAGCACTTTGACATGCCTCATGATATTGTGGCTTCTGAAGATG
GGACTGTGTACATTGGCGACGCACACACAAACACCGTGTGGAAGTTCACCCTCACTGAAAGCAGGCTGGA
AGTGGAGCATCGATCAGTTAAAAAGGCTGGCATTGAGGTCCCGGAAATCAAAGCCGAGGCAGTTGTTGAA
CCCAAAGTGAAGAACAAACCCACCTCCTCAGAATTGCAGAAGATGCAGGAGAAAAAGAAACTGATCAAAG
ATCCAGGCTCGGGAGTGCCTGTGGTTCTCATTACAACCCTTCTGGTTATCCCTGTGGTTGTCCTGCTGGC
CATTGCCATGTTTATTCGATGGAAAAAATCAAGGGCCTTTGGAGATCATGACCGAAAGCTCGAGTCGAGT
TCTGGAAGAGTACTGGGAAGACTCCGAGGAAAGGGAAGCAGCGGCTTAAATCTAGGAAATTTCTTTGCAA
GCCGGAAAGGCTACAGCAGAAAAGGGTTCGACCGAGTGAGCACAGAGGGGAGTGACCAAGAGAAGGACGA
AGATGATGGAAGTGAGTCTGAAGAGGAGTACTCGGCTCCGCTGCCCACTCCTGCACCTTCCTCCTGA

Translation (978 aa):
MAGRARSRLLLLLGLLALQSSCLAFRSPLSVFKRFKETTRSFSNECLGTTRPITPIDSSDFTLDIRMPGV
TPKESDTYFCMSMRLPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWFCDEGTCTDKANILYAW
ARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSLHLTRVPQPLIAGMYLMMSVN
TVIPPGEKVVNSDISCHYKMYPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVEHPV
DVAFGDILAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPEEAN
IPIPVKSDMVMIHGHHKETENKEKSALIQQPKQGEEEAFEQGDFYSLLSKLLGEREDVVHVHKYNPTEKT
ESGSDLVAEIANVVQKKDLGRSDAREGAEHEEGGNAILVRDRIHKFHRLESTLRPAESRALSFQQPGEGP
WEPELAGDFHVEEALEWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEED
TILVIDPNKAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLEPRSKEGPLLVLGRSMQPGSDQ
NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFITQWGEESSGSSPKPGQFSVPHSLALVPHLNQ
LCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE
IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTESRLEVEHRSVKKAGIEVPEIKAEAVVE
PKVKNKPTSSELQKMQEKKKLIKDPGSGVPVVLITTLLVIPVVVLLAIAMFIRWKKSRAFGDHDRKLESS
SGRVLGRLRGKGSSGLNLGNFFASRKGYSRKGFDRVSTEGSDQEKDEDDGSESEEEYSAPLPTPAPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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