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Report for CCDS48543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48543.1 Public Mus musculus 10 Slc16a10 23 108 98 CCDS HistoryNCBI Gene:72472Re-query CCDS DB by CCDS ID:48543.1Re-query CCDS DB by GeneID:72472See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092566.7 ENSMUSP00000090227.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092566.7Link to Ensembl Protein Viewer:ENSMUSP00000090227.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000092566Re-query CCDS DB by Protein ID:ENSMUSP00000090227
Original member Current member NCBI NM_001114332.1 NP_001107804.1 Accepted alive Link to Nucleotide Sequence:NM_001114332.1Link to Protein Sequence:NP_001107804.1Re-query CCDS DB by Nucleotide ID:NM_001114332Re-query CCDS DB by Protein ID:NP_001107804Link to BLAST:NP_001107804.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107804.1 512 Q3U9N9-1 512 100% 0 0

Chromosomal Locations for CCDS 48543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 40037172 40037404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40040599 40040827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40056487 40056630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40076564 40077017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40080663 40080807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40141703 40142036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGTGCCGTCCCAGGAGGAGCCCGCCGCCGAGCGGGAGACGAACGAGGCGCAGCCGCCCGGGCCCGCGC
CCTCGGATGACGCTCCGCTGCCCGGCCCGGGACCCTCGGATGTCTCCGACGTGGCCGCAGAGAAAGTGGA
GGTGGAGCTGACGAGGTCAGCGGGCAGTGAGCCCCCCGTTCCCCCCGAGGGCGGCTGGGGCTGGTTGGTG
ATGCTGGCGGCCATGTGGTGCAACGGGTCGGTGTTTGGCATCCAGAACGCCTACGGGGTGCTCTTCGTGT
CCATGCTGGACACCTTCAAGGCCAAGGACGATGACAACATGGCCTTCAAGACAGCGTGGGTGGGCTCGCT
GTCCATGGGCATGATCTTCTTCTGCTGCCCCATCGTGAGTGTCTTCACGGACATGTTCGGCTGCCGGAGA
ACAGCTGTTGTGGGGGCAGCTGTGGGATTCATTGGACTCATGTCCAGTTCTTTTGTAAGCTCCATCGAGC
CTCTGTACCTCACCTATGGAATCATATTTGCCTGCGGCTGCTCCTTTGCCTACCAGCCGTCACTGGTCAT
TTTGGGACACTACTTCAAGAAGCGCCTTGGACTAGTCAACGGCATCGTCACGGCCGGCAGCAGCGTCTTC
ACAATCCTGCTCCCTTTGCTGTTAGGAAATCTAATCAGCAGTGTGAAGCTCTTTAACACGCTGCGGATCC
TCTGCATCTTCATGTTTGTTCTCTTTCTGGCTGGCTTTACCTACCGACCTCTTGTTCCCAGCACCAAAGA
GAAAGAGAGTGGGGGCAGCAGAAGCTCATTCTTCTCCAGGAGAAAGCTTAGTCCTCCAAAAAAAGTCTTT
AACTTTGCCCTCTTCAAGGAGACAACCTATGCAGTGTGGGCTGCTGGGATACCACTTGCACTTTTTGGCT
ACTTTGTGCCTTACGTTCACTTGATGAACCATGTAAAGGAAAGGTTTCAAGATGTAAACAACAAAGAGGT
GCTCTTCATGTGCATTGGCATCACTTCAGGAGTTGGACGGCTTCTCTTTGGCCGCATTGCTGACTATTTG
CCCGGTGTGAAGAAGGTCTACCTCCAGGTTCTCTCCTTCTTCTTCATTGGCCTGATGTCCATGATGATTC
CCCTGTGCAGCGCCTTCGGAGCCCTCATTGCTGTCTGCCTTGCCATGGGTCTCTTCGATGGATGCTTCAT
TTCTATCATGGCGCCCATTGCCTTTGAACTAGTTGGTCCTCAGGATGCTTCCCAAGCAATTGGATTTCTA
CTTGGATTCATGTCGATACCCATGACTGTAGGCCCTCCTATTGCAGGGTTACTTCATGACAAGCTGGGCA
CCTACGACGTGGCCTTTTACCTTGCTGGAATCCCTCCCTTCGTTGGGGGTGTTGTGCTCTGTTTAATCCC
GTGGATCCATAGCAAGAAGCAAAGAAAGATCAGTAAGAACGCCGGAGGGGAGAAGATGGAGAAAATGCTG
GAGAACCAGAGCTCTCTACTGTCAGGCTCATCAGGAATCTTCAAAAAAGACTCCGCCTCGATTATTTAA

Translation (512 aa):
MVPSQEEPAAERETNEAQPPGPAPSDDAPLPGPGPSDVSDVAAEKVEVELTRSAGSEPPVPPEGGWGWLV
MLAAMWCNGSVFGIQNAYGVLFVSMLDTFKAKDDDNMAFKTAWVGSLSMGMIFFCCPIVSVFTDMFGCRR
TAVVGAAVGFIGLMSSSFVSSIEPLYLTYGIIFACGCSFAYQPSLVILGHYFKKRLGLVNGIVTAGSSVF
TILLPLLLGNLISSVKLFNTLRILCIFMFVLFLAGFTYRPLVPSTKEKESGGSRSSFFSRRKLSPPKKVF
NFALFKETTYAVWAAGIPLALFGYFVPYVHLMNHVKERFQDVNNKEVLFMCIGITSGVGRLLFGRIADYL
PGVKKVYLQVLSFFFIGLMSMMIPLCSAFGALIAVCLAMGLFDGCFISIMAPIAFELVGPQDASQAIGFL
LGFMSIPMTVGPPIAGLLHDKLGTYDVAFYLAGIPPFVGGVVLCLIPWIHSKKQRKISKNAGGEKMEKML
ENQSSLLSGSSGIFKKDSASII


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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