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Report for CCDS48592.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48592.1 Public Mus musculus 10 Fam13c 23 108 98 CCDS HistoryNCBI Gene:71721Re-query CCDS DB by CCDS ID:48592.1Re-query CCDS DB by GeneID:71721See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48592.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105436.8 ENSMUSP00000101076.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105436.8Link to Ensembl Protein Viewer:ENSMUSP00000101076.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105436Re-query CCDS DB by Protein ID:ENSMUSP00000101076
Original member NCBI NM_001143777.1 NP_001137249.1 Updated not alive Link to Nucleotide Sequence:NM_001143777.1Link to Protein Sequence:NP_001137249.1Re-query CCDS DB by Nucleotide ID:NM_001143777Re-query CCDS DB by Protein ID:NP_001137249
Current member NCBI NM_001143777.2 NP_001137249.1 Accepted alive Link to Nucleotide Sequence:NM_001143777.2Link to Protein Sequence:NP_001137249.1Re-query CCDS DB by Nucleotide ID:NM_001143777Re-query CCDS DB by Protein ID:NP_001137249Link to BLAST:NP_001137249.1

Chromosomal Locations for CCDS 48592.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 70451154 70451228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70477154 70477272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70498886 70498949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70520778 70520925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70534684 70534894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70536366 70536504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70542644 70542725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70544328 70544530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70551695 70551790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70553029 70553225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70554488 70554589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70557240 70557363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGGCAACTTCAAGTCCCGAAAGCCCAAATCCATCCTCAGAGCCGAGAGTGGTCGGAACCACGGAGAAA
GCCAGGAGACAGAGCATGTGGTACCCAGCCAGTCAGAGTGCCAGGGCAGAGCAGGAACACCGGCTCATGA
GAGTCCACAAAGCAGCATCTTCAGGTGCCAGGAAACGGTGCGACTTCAACCAAGAATAGACCAGAGGGCT
ACCATTTGGCCAAAGGATGCTTTTGGAACTCAGCAGGACTTACATGAGAATTCCTTGCTGAAGCTCCAAG
CCCTCGAGTCTGGTCTGTGCTCCGCGTTTCTGACGACCCAGGAAGAAGATGGCCAGGTGCACGGAGTTAA
GGACCCGGCCCCAGCTTCCACGCAGAGTGCGCCTGCCGACAGCGCAGATCCTGCAGATCCCATGCCAGCT
CATAAGGATGCACCGGGTGACGCCGACGGTACCTCAGAAGACCTCCAGTCTGCAGGGACCAGCAGGCTAC
TCTATCACATCACCGATGGTGACAATCCGTTGCTGTCACCACGGTGCTCCATCTTTAGCCAAAGTCAGAG
GTTCAACTTGGACCCTGAGTCCGCTCCATCTCCACCCAGCAGCCAGCAGTTCATGATGCCACGAAGCTCT
TCCCGATGTGGCAGTGGGGACGGCAAGGAGCCGCAGACCATTACACAGCTCACCAAGCACATCCAAAGCC
TCAAGAGGAAGATTCGCAAGTTTGAAGAAAAATTTGAACAAGAAAAGAAATACCGCCCGTCGCATGGGGA
CAAGACTTCAAATCCCGAAGTTCTGAAATGGATGAACGATTTGGCCAAGGGGCGCAAACAGCTCAAAGAA
CTAAAGCTGAAGCTGTCGGAAGAGCAAGGGAGTACGCCCAAGGGCCCTCGGAGAAACCTGTCCTGTGAAC
AGCCTCCAGTCCCCAGAGAAAATGGCAAGTCGGAAGCCGTGGGCCCCGAACCAGGCTCCTCTGGCGAGGA
GACTTCAGATGCTGTGGTGCCGGAGAAGAGAGAACAGACCCCTCCCCAGGACGATGGGAAGGGAACTAAG
CAAGACAAGAACCTCATAAAGCCTCTTTATGACCGATGCAGAGGTATCAAGCAAATCTTGCCGACACCAT
CCCTTATCCCAACAATTCAGGAGGAAGAGGACTCTGATGAAGACTGTCCACAGGGAAGTCAGCAACCCTC
TTTACCAGATCCAGTGTCCCGCCTACCTGTCGGTGATCACCTCATCTACTCGGAGACAGAGCCTGTGAGG
ACCCTGCTACCAGATGAAAAGAAAGAAGGGAAGCAGCCAGCTCTCTCCATGTCCAACTTACACGAGGCCA
CCATGCCCGTCCTCCTCGACCATCTCCGAGAAACTAGGGCTGACAAGAAGAGGCTACGGAAAGCCCTGCG
AGAATTTGAAGAACAATTTTTTAAACAGACGGGAAGAAGCCCCCAGAAGGAAGACAGGATGCCGATGGCA
GATGAGTACTGTGAATACAAGCACATAAAAGCCAAGCTGAGACTACTGGAGGTCCTCATCAGCAAGCAGG
ATGTGGCCAAAACTATTTGA

Translation (519 aa):
MGNFKSRKPKSILRAESGRNHGESQETEHVVPSQSECQGRAGTPAHESPQSSIFRCQETVRLQPRIDQRA
TIWPKDAFGTQQDLHENSLLKLQALESGLCSAFLTTQEEDGQVHGVKDPAPASTQSAPADSADPADPMPA
HKDAPGDADGTSEDLQSAGTSRLLYHITDGDNPLLSPRCSIFSQSQRFNLDPESAPSPPSSQQFMMPRSS
SRCGSGDGKEPQTITQLTKHIQSLKRKIRKFEEKFEQEKKYRPSHGDKTSNPEVLKWMNDLAKGRKQLKE
LKLKLSEEQGSTPKGPRRNLSCEQPPVPRENGKSEAVGPEPGSSGEETSDAVVPEKREQTPPQDDGKGTK
QDKNLIKPLYDRCRGIKQILPTPSLIPTIQEEEDSDEDCPQGSQQPSLPDPVSRLPVGDHLIYSETEPVR
TLLPDEKKEGKQPALSMSNLHEATMPVLLDHLRETRADKKRLRKALREFEEQFFKQTGRSPQKEDRMPMA
DEYCEYKHIKAKLRLLEVLISKQDVAKTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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