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Report for CCDS48611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48611.1 Public Mus musculus 10 Trpm2 23 108 98 CCDS HistoryNCBI Gene:28240Re-query CCDS DB by CCDS ID:48611.1Re-query CCDS DB by GeneID:28240See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48611.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105401.8 ENSMUSP00000101040.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105401.8Link to Ensembl Protein Viewer:ENSMUSP00000101040.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105401Re-query CCDS DB by Protein ID:ENSMUSP00000101040
Original member Current member NCBI NM_138301.2 NP_612174.2 Accepted alive Link to Nucleotide Sequence:NM_138301.2Link to Protein Sequence:NP_612174.2Re-query CCDS DB by Nucleotide ID:NM_138301Re-query CCDS DB by Protein ID:NP_612174Link to BLAST:NP_612174.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612174.2 1506 Q91YD4 1506 100% 0 0

Chromosomal Locations for CCDS 48611.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 77910176 77910322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77911289 77911405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77912578 77912679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77913805 77913910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77914712 77914798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77917707 77917808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77918080 77918153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77918865 77919022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77919618 77919705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77920445 77920532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77923497 77923629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77923982 77924163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77925678 77925861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77929213 77929384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77929829 77929961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77930536 77930654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77932135 77932348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77933574 77933686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77934681 77934826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77935045 77935174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77935878 77936015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77937792 77938142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77938327 77938448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77941147 77941249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77942919 77943119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77943922 77943983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77945835 77946015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77947870 77948036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77949184 77949364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77959872 77960040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77965979 77966067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77966851 77967012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4521 nt):
ATGGAGTCCTTGGACCGGAGAAGAACTGGCTCTGAGCAGGAGGAGGGCTTTGGGGTGCAGTCAAGGAGGG
CCACTGACCTGGGCATGGTCCCCAATCTCCGACGAAGCAATAGCAGCCTTTGCAAGAGCAGGAGATTTCT
GTGCTCTTTCAGCAGTGAGAAGCAAGAAAACCTTAGCTCATGGATTCCCGAGAATATCAAGAAGAAGGAG
TGTGTGTACTTCGTGGAAAGTTCCAAACTCTCGGACGCAGGGAAGGTAGTGTGTGCGTGTGGTTATACCC
ACGAGCAACACTTGGAGGTGGCCATCAAGCCACACACCTTCCAGGGCAAGGAGTGGGATCCAAAGAAACA
CGTCCAAGAGATGCCCACAGATGCCTTTGGTGACATCGTTTTCACAGACCTGAGCCAGAAAGTGGGGAAG
TATGTCCGGGTCTCCCAGGACACGCCCTCCAGTGTCATCTACCAGCTCATGACCCAGCACTGGGGCCTAG
ATGTCCCCAACCTCCTCATCTCCGTGACCGGTGGGGCCAAGAACTTCAACATGAAGCTGAGGCTGAAGAG
CATCTTCCGGAGAGGCTTGGTCAAGGTGGCTCAAACCACGGGGGCCTGGATCATCACTGGAGGATCCCAC
ACAGGCGTGATGAAGCAGGTGGGCGAAGCGGTACGGGACTTCAGTCTGAGCAGCAGCTGCAAAGAAGGTG
AAGTCATCACTATTGGCGTAGCCACGTGGGGCACCATCCACAACCGCGAGGGACTGATCCATCCCATGGG
AGGCTTCCCCGCCGAGTACATGCTGGATGAGGAAGGCCAAGGGAACCTGACCTGCTTGGACAGCAACCAT
TCCCACTTCATCTTGGTGGATGATGGGACCCACGGGCAATATGGTGTGGAGATTCCGCTGAGGACTAAGC
TGGAAAAGTTCATCTCAGAGCAAACGAAGGAAAGGGGAGGTGTGGCCATCAAGATCCCCATTGTCTGCGT
GGTGTTGGAGGGTGGCCCTGGCACTCTGCATACAATCTACAATGCCATCAACAATGGCACACCCTGCGTG
ATAGTGGAGGGCTCTGGCCGAGTGGCTGACGTCATCGCTCAGGTAGCTACTCTGCCTGTCTCTGAGATCA
CCATCTCCTTGATCCAGCAGAAGCTCAGCATATTCTTCCAGGAGATGTTTGAGACTTTCACCGAAAACCA
GATTGTGGAATGGACCAAAAAGATCCAAGACATTGTCCGGAGGCGGCAGCTGCTGACGATCTTCCGGGAA
GGCAAGGATGGTCAGCAGGATGTGGATGTGGCCATTCTGCAGGCGTTACTGAAAGCCTCTCGAAGCCAAG
ACCACTTTGGCCACGAGAACTGGGACCACCAACTGAAGTTGGCTGTGGCCTGGAACCGCGTGGACATCGC
TCGCAGTGAGATCTTCACCGATGAATGGCAGTGGAAGCCTGCAGATCTGCATCCCATGATGACGGCCGCT
CTCATCTCCAACAAGCCTGAGTTCGTGAGGCTCTTTCTGGAGAATGGGGTGCGGCTCAAGGAGTTTGTCA
CTTGGGATACTCTTCTCTGCCTGTACGAGAACCTGGAGCCGTCCTGTCTCTTCCACAGCAAGCTACAGAA
GGTGCTGGCCGAAGAACAGCGCTTAGCCTATGCATCTGCAACACCCCGCCTGCACATGCACCATGTGGCC
CAGGTGCTTCGTGAACTCCTGGGGGACTCCACGCAGCTGCTGTACCCCCGGCCCCGGTACACTGACAGGC
CACGGCTCTCGATGACCGTGCCACACATCAAGCTGAACGTGCAGGGAGTGAGCCTCCGGTCCCTCTATAA
GCGATCAACAGGCCACGTTACCTTCACCATTGACCCAGTCCGTGACCTTCTCATTTGGGCCGTTATCCAG
AACCACAGGGAGCTGGCAGGCATCATCTGGGCTCAGAGTCAGGACTGTACTGCCGCAGCACTGGCCTGTA
GCAAGATCCTGAAGGAGCTGTCCAAGGAGGAGGAAGATACAGACAGCTCTGAGGAGATGCTGGCACTGGC
AGACGAGTTTGAGCACAGAGCTATAGGCGTCTTCACTGAGTGCTACAGGAAGGATGAGGAAAGAGCCCAG
AAGCTGCTTGTCCGTGTGTCTGAGGCCTGGGGGAAGACCACCTGCCTGCAGCTGGCCCTAGAGGCCAAGG
ACATGAAATTCGTGTCTCATGGAGGCATCCAGGCTTTCCTAACCAAGGTGTGGTGGGGCCAGCTCTGTGT
GGACAATGGCCTGTGGAGGATCATCCTGTGCATGCTGGCCTTCCCGCTGCTCTTCACCGGCTTCATCTCC
TTCAGGGAAAAGAGGCTGCAGGCACTGTGTCGCCCAGCCCGCGTCCGCGCCTTCTTCAATGCGCCTGTGG
TCATCTTCCACATGAATATCCTCTCCTACTTTGCCTTCCTCTGCCTGTTCGCCTACGTGCTCATGGTGGA
CTTCCAGCCTTCTCCATCCTGGTGCGAGTACCTCATCTACCTGTGGCTCTTCTCCCTGGTGTGCGAAGAG
ACTCGGCAGCTATTCTATGATCCTGATGGCTGTGGACTAATGAAGATGGCGTCCCTGTACTTCAGTGACT
TCTGGAACAAACTGGACGTTGGGGCCATTCTGCTCTTCATAGTAGGACTGACCTGTCGGCTCATCCCAGC
GACGCTGTACCCTGGGCGCATCATCCTGTCTTTGGACTTCATCATGTTCTGTCTCCGTCTCATGCACATC
TTCACTATTAGCAAGACACTGGGGCCCAAGATAATCATCGTGAAGCGGATGATGAAGGACGTCTTCTTCT
TCCTCTTTCTCCTGGCGGTGTGGGTGGTGTCCTTCGGCGTAGCTAAGCAGGCCATTCTCATACATAACGA
GAGCCGCGTGGACTGGATCTTCCGTGGGGTTGTCTATCACTCTTACCTGACCATCTTTGGCCAGATCCCA
ACCTACATTGACGGTGTGAATTTCAGCATGGACCAGTGCAGCCCCAATGGCACGGACCCCTACAAGCCTA
AGTGTCCTGAGAGCGACTGGACGGGACAGGCACCTGCCTTCCCCGAGTGGCTGACTGTCACCCTGCTCTG
CCTCTACCTGCTCTTTGCCAACATCCTGCTGCTTAACCTGCTCATCGCCATGTTCAACTACACCTTCCAG
GAGGTGCAGGAACACACAGACCAGATCTGGAAATTCCAGCGCCACGACCTGATCGAGGAGTACCATGGCC
GTCCCCCGGCACCTCCCCCACTCATCCTCCTCAGCCACCTGCAGCTCCTGATCAAGAGGATTGTCCTGAA
GATCCCTGCCAAGAGGCATAAGCAGCTCAAGAACAAGCTGGAGAAGAACGAGGAGACAGCGCTCCTGTCT
TGGGAACTGTACCTGAAGGAGAACTACCTGCAGAACCAGCAGTACCAGCAGAAACAGCGTCCAGAGCAGA
AAATCCAAGACATCAGTGAGAAAGTGGACACCATGGTGGATCTGCTGGACATGGACCAGGTGAAGAGGTC
AGGCTCCACAGAGCAGAGACTGGCTTCCCTGGAGGAACAGGTGACTCAGGTGACCAGAGCTTTGCACTGG
ATCGTGACAACCCTGAAGGACAGTGGCTTTGGCTCAGGAGCAGGTGCGCTGACCCTGGCACCCCAGAGGG
CCTTCGATGAGCCAGATGCTGAGCTGAGTATCAGGAGGAAAGTAGAGGAACCAGGAGATGGTTACCACGT
GAGCGCCCGGCATCTCCTCTATCCCAATGCCCGCATCATGCGCTTCCCCGTGCCTAACGAGAAGGTGCCT
TGGGCGGCAGAGTTTCTGATCTACGATCCTCCCTTTTACACCGCTGAGAAGGATGTGGCTCTCACAGACC
CCGTGGGAGACACTGCAGAACCTCTGTCTAAGATCAGTTACAACGTCGTGGATGGACCGACGGACCGTCG
CAGCTTCCATGGAGTCTACGTGGTCGAGTATGGGTTCCCGTTGAACCCCATGGGCCGCACAGGGTTGCGT
GGTCGTGGGAGCCTCAGCTGGTTTGGTCCCAACCACACTCTGCAGCCAGTTGTCACCCGGTGGAAGAGGA
ACCAGGGTGGAGCCATCTGCCGGAAGAGTGTCAGGAAGATGCTGGAGGTGCTAGTGATGAAGCTGCCTCG
CTCTGAGCACTGGGCCTTGCCTGGGGGCTCTAGGGAGCCAGGGGAGATGCTACCACGGAAGCTGAAACGG
GTCCTCCGGCAGGAGTTCTGGGTGGCCTTTGAGACCTTGCTGATGCAAGGTACAGAGGTATACAAAGGGT
ACGTGGATGACCCAAGGAACACAGACAATGCCTGGATCGAGACAGTGGCTGTCAGCATCCATTTTCAGGA
CCAGAATGATATGGAGCTGAAGAGGCTGGAAGAGAACCTGCACACTCATGATCCAAAGGAGTTGACCCGT
GACCTGAAGCTGTCTACTGAATGGCAGGTGGTAGACCGGCGGATCCCTCTGTATGCGAACCACAAGACCA
TCCTCCAGAAGGTGGCCTCACTGTTTGGAGCTCACTTCTGA

Translation (1506 aa):
MESLDRRRTGSEQEEGFGVQSRRATDLGMVPNLRRSNSSLCKSRRFLCSFSSEKQENLSSWIPENIKKKE
CVYFVESSKLSDAGKVVCACGYTHEQHLEVAIKPHTFQGKEWDPKKHVQEMPTDAFGDIVFTDLSQKVGK
YVRVSQDTPSSVIYQLMTQHWGLDVPNLLISVTGGAKNFNMKLRLKSIFRRGLVKVAQTTGAWIITGGSH
TGVMKQVGEAVRDFSLSSSCKEGEVITIGVATWGTIHNREGLIHPMGGFPAEYMLDEEGQGNLTCLDSNH
SHFILVDDGTHGQYGVEIPLRTKLEKFISEQTKERGGVAIKIPIVCVVLEGGPGTLHTIYNAINNGTPCV
IVEGSGRVADVIAQVATLPVSEITISLIQQKLSIFFQEMFETFTENQIVEWTKKIQDIVRRRQLLTIFRE
GKDGQQDVDVAILQALLKASRSQDHFGHENWDHQLKLAVAWNRVDIARSEIFTDEWQWKPADLHPMMTAA
LISNKPEFVRLFLENGVRLKEFVTWDTLLCLYENLEPSCLFHSKLQKVLAEEQRLAYASATPRLHMHHVA
QVLRELLGDSTQLLYPRPRYTDRPRLSMTVPHIKLNVQGVSLRSLYKRSTGHVTFTIDPVRDLLIWAVIQ
NHRELAGIIWAQSQDCTAAALACSKILKELSKEEEDTDSSEEMLALADEFEHRAIGVFTECYRKDEERAQ
KLLVRVSEAWGKTTCLQLALEAKDMKFVSHGGIQAFLTKVWWGQLCVDNGLWRIILCMLAFPLLFTGFIS
FREKRLQALCRPARVRAFFNAPVVIFHMNILSYFAFLCLFAYVLMVDFQPSPSWCEYLIYLWLFSLVCEE
TRQLFYDPDGCGLMKMASLYFSDFWNKLDVGAILLFIVGLTCRLIPATLYPGRIILSLDFIMFCLRLMHI
FTISKTLGPKIIIVKRMMKDVFFFLFLLAVWVVSFGVAKQAILIHNESRVDWIFRGVVYHSYLTIFGQIP
TYIDGVNFSMDQCSPNGTDPYKPKCPESDWTGQAPAFPEWLTVTLLCLYLLFANILLLNLLIAMFNYTFQ
EVQEHTDQIWKFQRHDLIEEYHGRPPAPPPLILLSHLQLLIKRIVLKIPAKRHKQLKNKLEKNEETALLS
WELYLKENYLQNQQYQQKQRPEQKIQDISEKVDTMVDLLDMDQVKRSGSTEQRLASLEEQVTQVTRALHW
IVTTLKDSGFGSGAGALTLAPQRAFDEPDAELSIRRKVEEPGDGYHVSARHLLYPNARIMRFPVPNEKVP
WAAEFLIYDPPFYTAEKDVALTDPVGDTAEPLSKISYNVVDGPTDRRSFHGVYVVEYGFPLNPMGRTGLR
GRGSLSWFGPNHTLQPVVTRWKRNQGGAICRKSVRKMLEVLVMKLPRSEHWALPGGSREPGEMLPRKLKR
VLRQEFWVAFETLLMQGTEVYKGYVDDPRNTDNAWIETVAVSIHFQDQNDMELKRLEENLHTHDPKELTR
DLKLSTEWQVVDRRIPLYANHKTILQKVASLFGAHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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