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Report for CCDS48638.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48638.1 Public Mus musculus 10 Csnk1g2 23 108 98 CCDS HistoryNCBI Gene:103236Re-query CCDS DB by CCDS ID:48638.1Re-query CCDS DB by GeneID:103236See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48638.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085435.6 ENSMUSP00000082560.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085435.6Link to Ensembl Protein Viewer:ENSMUSP00000082560.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085435Re-query CCDS DB by Protein ID:ENSMUSP00000082560
Original member Current member NCBI NM_001159591.1 NP_001153063.1 Accepted alive Link to Nucleotide Sequence:NM_001159591.1Link to Protein Sequence:NP_001153063.1Re-query CCDS DB by Nucleotide ID:NM_001159591Re-query CCDS DB by Protein ID:NP_001153063Link to BLAST:NP_001153063.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153063.1 415 Q8BVP5 415 100% 0 0

Chromosomal Locations for CCDS 48638.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80634455 80634641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80637888 80637928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80638010 80638079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80638161 80638309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80638394 80638628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80638706 80638791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80638880 80638964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80639085 80639233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80639580 80639663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80639768 80639874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80640022 80640076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGATTTTGACAAGAAAGGAGGGAAGGGGGAGTTGGAGGAGGGCAGGAGAATGTCCAAAACCGGCACGA
GTCGGAGCAACCACGGCGTCCGCAGTTCGGGGACCAGCTCAGGGGTCCTGATGGTGGGCCCAAACTTCCG
AGTCGGCAAGAAGATAGGCTGTGGGAACTTCGGGGAGCTTCGCCTAGGAAAGAATCTGTATACAAATGAG
TACGTGGCTATCAAGCTGGAGCCCATCAAGTCCCGGGCCCCACAGCTGCACCTGGAGTACCGCTTTTACA
AGCAGCTCAGCACGACAGAGGGCGTCCCTCAGGTCTACTACTTCGGCCCTTGTGGGAAGTACAACGCCAT
GGTGCTGGAGCTGCTGGGGCCCAGCCTGGAGGACCTTTTCGACCTGTGCGACCGCACCTTCACGCTGAAG
ACGGTGCTGATGATCGCCATCCAGCTGATCACGCGCATGGAGTACGTGCACACCAAGAGCCTCATCTACC
GTGACGTGAAGCCCGAGAACTTCCTGGTTGGGCGGCCGGGCAGCAAGCGGCAGCACTCCATCCACATCAT
CGACTTTGGGCTGGCCAAGGAGTACATCGACCCTGAGACTAAGAAGCACATCCCATATCGCGAGCACAAG
AGCCTGACAGGCACTGCGCGCTACATGAGCATCAACACGCACTTGGGCAAAGAGCAGAGCCGCCGGGATG
ACCTGGAGGCGCTGGGACACATGTTCATGTACTTCCTGCGCGGCAGTCTGCCCTGGCAGGGGCTCAAGGC
AGACACGCTGAAGGAGCGCTACCAGAAGATTGGAGACACCAAGCGTGCCACACCAATCGAGGTGCTGTGT
GAGAGCTTCCCGGAGGAGATGGCCACCTATTTGCGCTATGTGCGGCGCCTAGACTTTTTTGAGAAGCCAG
ACTACGACTACCTGAGGAAGCTCTTCACTGACCTCTTTGACCGCAGCGGCTACGTGTTTGACTACGAGTA
TGACTGGGCCGGCAAGCCCCTGCCGACACCCATCGGCACCGTCCACCCTGACGTGCCCTCCCAGCCACCA
CATCGCGACAAAGCTCAGCTCCACACCAAGAACCAGGCGCTCAACTCCACTAATGGAGAGCTGAACACAG
ACGACCCCACCGCGGGCCACTCCAACGCCCCCATCGCGGCCCCCGCAGAAGTAGAGGTGGCAGATGAAAC
AAAGTGCTGCTGCTTCTTCAAGAGGAGAAAGAGAAAATCGCTGCAGCGACATAAGTGA

Translation (415 aa):
MDFDKKGGKGELEEGRRMSKTGTSRSNHGVRSSGTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNE
YVAIKLEPIKSRAPQLHLEYRFYKQLSTTEGVPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFTLK
TVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGSKRQHSIHIIDFGLAKEYIDPETKKHIPYREHK
SLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC
ESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRSGYVFDYEYDWAGKPLPTPIGTVHPDVPSQPP
HRDKAQLHTKNQALNSTNGELNTDDPTAGHSNAPIAAPAEVEVADETKCCCFFKRRKRKSLQRHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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