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Report for CCDS48711.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48711.1 Public Mus musculus 10 Ctdsp2 23 108 98 CCDS HistoryNCBI Gene:52468Re-query CCDS DB by CCDS ID:48711.1Re-query CCDS DB by GeneID:52468See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48711.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105256.9 ENSMUSP00000100891.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105256.9Link to Ensembl Protein Viewer:ENSMUSP00000100891.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105256Re-query CCDS DB by Protein ID:ENSMUSP00000100891
Original member Current member NCBI NM_001113470.1 NP_001106941.1 Accepted alive Link to Nucleotide Sequence:NM_001113470.1Link to Protein Sequence:NP_001106941.1Re-query CCDS DB by Nucleotide ID:NM_001113470Re-query CCDS DB by Protein ID:NP_001106941Link to BLAST:NP_001106941.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106941.1 270 Q8BX07 270 100% 0 0

Chromosomal Locations for CCDS 48711.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 126979238 126979301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126991531 126991676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126992599 126992637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126993008 126993109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126993852 126993908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126995855 126995947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126996026 126996211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126996361 126996486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACCAAGCAAGGCCTAG
TCTCCAAGTCCTCGCCTAAGAAACCCCGTGGCCGCAGCATCTTCAAGGCCCTCTTGTGCTGTTTCCACAC
ACAGCATGTTGTCCAGTCCAGCTCTTCCACTGAGCTCACACACAAGGAGGAGGCCAACACCATCGCCAAG
TCCGATCTCCTCCAGTGTCTCCAGTACCAGTTTTATCAGATCCCTGGGACCTGCCTGCTCCCCGAGGTGA
CAGAGCAAGATCAAGGCAGGATCTGCGTGGTCATTGACCTGGATGAGACCCTTGTGCACAGTTCCTTTAA
GCCGATCAACAATGCTGACTTCATAGTGCCTGTAGAGATTGAGGGGACCACGCACCAGGTATATGTGCTC
AAGAGGCCTTACGTCGATGAGTTCCTGAGACGGATGGGGGAGCTCTTCGAATGTGTTCTCTTCACTGCCA
GCTTGGCCAAGTATGCTGACCCTGTGACTGATCTCCTGGACCGGTGCGGGGTGTTCCGGGCCCGCCTGTT
CCGAGAGGCTTGTGTGTTCCACCAGGGCTGCTATGTCAAGGACCTCAGCCGCCTGGGAAGGGACCTGAGG
AAAACTGTCATCCTGGACAACTCCCCTGCATCTTACATCTTCCACCCAGAAAATGCAGTGCCTGTGCAGT
CCTGGTTTGATGACATGGCAGATACAGAGTTGCTGAACCTGATTCCAGTCTTCGAGGAGCTAAGTGGAAC
TGATGATGTCTACACCAGCCTTGGGCAGCTGCGGGCCCCTTAG

Translation (270 aa):
MEHGSIITQARREDALVLTKQGLVSKSSPKKPRGRSIFKALLCCFHTQHVVQSSSSTELTHKEEANTIAK
SDLLQCLQYQFYQIPGTCLLPEVTEQDQGRICVVIDLDETLVHSSFKPINNADFIVPVEIEGTTHQVYVL
KRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFREACVFHQGCYVKDLSRLGRDLR
KTVILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPVFEELSGTDDVYTSLGQLRAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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