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Report for CCDS48751.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48751.1 Public Mus musculus 11 Ccm2 23 108 98 CCDS HistoryNCBI Gene:216527Re-query CCDS DB by CCDS ID:48751.1Re-query CCDS DB by GeneID:216527See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48751.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109721.2 ENSMUSP00000105343.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109721.2Link to Ensembl Protein Viewer:ENSMUSP00000105343.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109721Re-query CCDS DB by Protein ID:ENSMUSP00000105343
Original member Current member EBI ENSMUST00000109722.8 ENSMUSP00000105344.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109722.8Link to Ensembl Protein Viewer:ENSMUSP00000105344.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109722Re-query CCDS DB by Protein ID:ENSMUSP00000105344
Original member Current member NCBI NM_001190344.1 NP_001177273.1 Accepted alive Link to Nucleotide Sequence:NM_001190344.1Link to Protein Sequence:NP_001177273.1Re-query CCDS DB by Nucleotide ID:NM_001190344Re-query CCDS DB by Protein ID:NP_001177273Link to BLAST:NP_001177273.1

Chromosomal Locations for CCDS 48751.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6561230 6561241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6584520 6584603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6585034 6585217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6589432 6589568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6590753 6590888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6593067 6593124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6593602 6593740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6594148 6594286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6596081 6596361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGAGAACGAGTATTTAGGTCAGTTAACATCCATTCCCGGCTACCTGAACCCTTCCAGTAGGACGGAAA
TCCTGCATTTCATAGACAAGGCAAAGCGGTCCCACCAGCTTCCTGGGCACCTGACTCAGGAGCACGATGC
TGTGCTCAGTCTGTCTGCCTACAATGTCAAGTTGGCCTGGAGGGACGGGGAGGACATTATCCTCAGGGTG
CCCATCCATGATATCGCTGCTGTCTCCTATGTCCGAGATGATGCTGCACACCTGGTGGTCCTGAAGACAG
CCCAGGACCCAGGCATCTCTCCCAGCCAGAGTCTGTGTGCAGAAAGTTCTAGAGGCCTCAGCGCAGGTTC
CTTGTCAGAAAGTGCAGTGGGGCCAGTAGAGGCATGTTGCCTGGTCATCATGGCCACAGAGAGCAAGGTC
GCCGCTGAAGAGTTGTGCTCCCTGCTCAGCCAGGTCTTCCAGATTGTTTACACGGAGTCCACCATCGACT
TTCTGGACCGAGCAATATTTGATGGGGCTTCCACACCTACCCACCACCTGTCGCTGCACAGTGATGACTC
TTCCACGAAAGTGGACATGAAGGACAGTTACGATGCTGACGCCAGCACCTTCTGCTTCCCGGACTCTGGG
GATGTGGGAGGCCTGCCGCCCTTACCCTTCTGCATGCAGACATCACCCCATAGCAAGACTGTCAGTGAGA
GCGAGCTGAGCACCAGCGCCACGGAACTGCTGCAGGACTACATGCTCACGTTACGTACGAAGCTGTCATC
ACAGGAGATCCAGCAGTTCGCAGCTCTGCTACATGAGTACCGCAATGGGGCCTCTATCCATGAGTTTTGC
ATCAGCCTGCGGCAGCTCTATGGGGACAGCCGCAAGTTCCTGCTACTTGGTCTCAGACCCTTCATACCTG
AGAAGGACAGTCAGCACTTTGAAAACTTCCTGGAGACCATTGGCGTGAAAGACGGCCGTGGCATCATCAC
TGACAGCTTTGGTAGGCATCGTCGTGCCCTGAGTACCACCTCCACATCCACCATCAATGGGAACAGGACC
ACAGGCAGCCCTGATGACCGCTCTGCGCCCTCAGAGGGGGATGAGTGGGACCGCATGATTTCAGACATCA
GTAGTGATATTGAAGCGCTAGGCTGCAGCATGGACCAGGACTCAGCGTGA

Translation (389 aa):
MENEYLGQLTSIPGYLNPSSRTEILHFIDKAKRSHQLPGHLTQEHDAVLSLSAYNVKLAWRDGEDIILRV
PIHDIAAVSYVRDDAAHLVVLKTAQDPGISPSQSLCAESSRGLSAGSLSESAVGPVEACCLVIMATESKV
AAEELCSLLSQVFQIVYTESTIDFLDRAIFDGASTPTHHLSLHSDDSSTKVDMKDSYDADASTFCFPDSG
DVGGLPPLPFCMQTSPHSKTVSESELSTSATELLQDYMLTLRTKLSSQEIQQFAALLHEYRNGASIHEFC
ISLRQLYGDSRKFLLLGLRPFIPEKDSQHFENFLETIGVKDGRGIITDSFGRHRRALSTTSTSTINGNRT
TGSPDDRSAPSEGDEWDRMISDISSDIEALGCSMDQDSA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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