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Report for CCDS48759.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48759.1 Public Mus musculus 11 Bcl11a 23 108 98 CCDS HistoryNCBI Gene:14025Re-query CCDS DB by CCDS ID:48759.1Re-query CCDS DB by GeneID:14025See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48759.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118955.1 ENSMUSP00000112948.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118955.1Link to Ensembl Protein Viewer:ENSMUSP00000112948.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118955Re-query CCDS DB by Protein ID:ENSMUSP00000112948
Original member Current member NCBI NM_001159290.1 NP_001152762.1 Accepted alive Link to Nucleotide Sequence:NM_001159290.1Link to Protein Sequence:NP_001152762.1Re-query CCDS DB by Nucleotide ID:NM_001159290Re-query CCDS DB by Protein ID:NP_001152762Link to BLAST:NP_001152762.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152762.1 191 Q9QYE3-14 191 100% 0 0

Chromosomal Locations for CCDS 48759.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 24085422 24085650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 24158253 24158354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 24163146 24163288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 24172699 24172800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGAATTTCCCACTGGGGGACATTCTTATTTTTATCGAGCACAAACGGAAACAATGCAATGGCAGCCTCT
GCTTAGAAAAAGGTGTGGATAAGCCGCCTTCCCCTTCTCCCATCGAGATGAAAAAGGCATCCAATCCTGT
GGAGGTTGGCATCCAGGTCACGCCAGAGGATGACGATTGTTTATCAACGTCATCTAGAGGAATTTGCCCC
AAACAGGAACACATAGCAGATAAACTTCTGCACTGGAGGGGCCTGTCCTCTCCTCGGTCTGCACACGGAG
CTCTAATCCCCACGCCCGGGATGAGTGCAGAATATGCCCCGCAGGGTATTTGTAAAGATGAGCCCAGCAG
CTACACATGTACAACTTGCAAACAGCCATTCACCAGTGCATGGTTTCTCTTGCAACACGCACAGAACACT
CATGGATTAAGAATCTACTTAGAAAGTGAACACGGAAGTCCCCTGACCCCGCGGGTCCTTCACACACCCC
CGTTCGGCGTAGTACCCCGCGAGCTCAAGATGTGTGGCAGTTTTCGGATGGAAGCTCAAGAACCCTTAAG
TTCTGAGAAACTTTGA

Translation (191 aa):
MNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKASNPVEVGIQVTPEDDDCLSTSSRGICP
KQEHIADKLLHWRGLSSPRSAHGALIPTPGMSAEYAPQGICKDEPSSYTCTTCKQPFTSAWFLLQHAQNT
HGLRIYLESEHGSPLTPRVLHTPPFGVVPRELKMCGSFRMEAQEPLSSEKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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