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Report for CCDS48883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48883.1 Public Mus musculus 11 Mbtd1 23 108 98 CCDS HistoryNCBI Gene:103537Re-query CCDS DB by CCDS ID:48883.1Re-query CCDS DB by GeneID:103537See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107853.7 ENSMUSP00000103485.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107853.7Link to Ensembl Protein Viewer:ENSMUSP00000103485.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107853Re-query CCDS DB by Protein ID:ENSMUSP00000103485
Original member Current member EBI ENSMUST00000107854.8 ENSMUSP00000103486.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107854.8Link to Ensembl Protein Viewer:ENSMUSP00000103486.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107854Re-query CCDS DB by Protein ID:ENSMUSP00000103486
Original member Current member NCBI NM_001363336.1 NP_001350265.1 Accepted alive Link to Nucleotide Sequence:NM_001363336.1Link to Protein Sequence:NP_001350265.1Re-query CCDS DB by Nucleotide ID:NM_001363336Re-query CCDS DB by Protein ID:NP_001350265Link to BLAST:NP_001350265.1
Original member Current member NCBI NM_134012.4 NP_598773.2 Accepted alive Link to Nucleotide Sequence:NM_134012.4Link to Protein Sequence:NP_598773.2Re-query CCDS DB by Nucleotide ID:NM_134012Re-query CCDS DB by Protein ID:NP_598773Link to BLAST:NP_598773.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350265.1 631 Q6P5G3-1 631 100% 0 0
NP_598773.2 631 Q6P5G3-1 631 100% 0 0

Chromosomal Locations for CCDS 48883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 93905205 93905358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93908804 93908937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93910283 93910406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93912376 93912458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93921367 93921484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93923146 93923280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93923791 93923879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93924425 93924659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93925667 93925722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93926222 93926326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93929614 93929761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93931813 93931895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93932220 93932454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93933881 93933958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93943775 93943893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGTTTGACGGCTATGATAGCTGCAGTGAGGACACAAGTAGCAGCTCCAGCTCTGAGGAGAGTGAAGAAG
AAGTTGCTCCTTTACCTTCCAATCTCCCAATCATCAAGAATAATGGACAAGTCTACACATACCCAGATGG
TAAATCTGGCATGGCTACCTGTGAGATGTGTGGGATGGTCGGTGTGCGAGATGCTTTTTACTCTAAAACG
AAACGTTTCTGCAGTGTTTCCTGTTCAAGAAGTTACTCGTCAAACTCTAAGAAGGCAAGCATTCTGGCCA
GACTTCAGGGTAAGCCTCCAACAAAGAAAGCAAAAGTCCTTCAAAAACAACCTTTAGTTGCTAAATTAGC
TGCCTATGCCCAGTATCAAGCTACCTTGCAAAATCAAGCAAAGACAAAAGCAGGCAATTCTGCAATCTCT
GTGGAAGGCTTCAGCTGGGGTAACTACATCAACAGCAACAGCTTCATAGCAGCTCCAGTGGCCTGTTTTA
AGCATGCACCTATGGGGACCTGCTGGGGTGATATCTCGGAAAATGTAAGGATAGAAGTTCCCAATACAGA
CTGCAGTCTACCTACCAAAGTCTTCTGGATTGCTGGAATTATAAAATTAGCAGGTTATAATGCCCTTTTG
AGATATGAAGGATTTGAAAATGATTCTTCTCTGGACTTCTGGTGCAATATATGTGGGTCTGATATTCATC
CAGTTGGTTGGTGTGCAGCTAGTGGAAAACCTCTCGTTCCTCCTAGAACTGTTCAACATAAATATACAAA
CTGGAAAGCTTTTCTAGTAAAAAGACTTACTGGTGCCAAAACACTTCCTCCTGATTTCTCACAAAAGGTT
TCTGAGAGTATGCAATATCCTTTCAAACCTTGCATGAGAGTAGAAGTAGTTGACAAGAGGCATTTATGTC
GAACAAGAGTAGCAGTGGTGGAAAGTGTAATTGGAGGACGACTACGGCTGGTGTATGAAGAGAGTGAAGA
TAGAACAGACGACTTCTGGTGCCACATGCACAGCCCCTTAATCCACCATATTGGATGGTCAAGAAGCATA
GGCCATCGATTCAAGAGATCAGATATTACGAAGAAACAGGACGGACATTTCGATACACCTCCACACTTAT
TTGCTAAGGTAAAAGAAGTAGACCAGAGTGGAGAATGGTTCAAAGAAGGAATGAAATTGGAAGCTATAGA
CCCATTAAATCTTTCTACAATATGTGTTGCCACCATTAGAAAGGTGCTGGCTGATGGATTCCTGATGATT
GGGATTGATGGCTCAGAAGCAGCAGATGGATCTGACTGGTTCTGTTATCATGCAACCTCTCCTTCCATTT
TCCCTGTGGGTTTCTGTGAAATTAACATGATAGAACTGACTCCACCCAGAGGTTACACAAAACTTCCTTT
TAAATGGTTTGACTACCTCAGGGAAACCGGCTCCATTGCAGCACCAGTAAAACTATTTAATAAGGATGTT
CCAAACCACGGATTCCGTGTAGGAATGAAATTAGAAGCTGTAGATCTCATGGAGCCACGGTTAATATGTG
TAGCCACAGTTACTCGAATTATTCACCGTCTCTTGAGGATACATTTTGATGGTTGGGAAGAAGAGTATGA
CCAGTGGGTAGACTGTGAGTCCCCTGACCTCTATCCTGTAGGGTGGTGTCAGTTAACTGGATATCAACTA
CAGCCTCCAGCATCACAGTCATCAAGAGAAAGCCAATCAGCTTCTTCAAAACAGAAGAAAAAGGCTAAGT
CTCAGCAATACAAAGGACATAAGAAAATGACCACGTCACAGCTGAAGGAGGAGCTGCTGGACGGGGAGGA
CTATAGCTTCCTCCATGGAGCATCTGACCAGGAAAGCAATGGCTCTGCCACCGTCTACATCAAACAAGAG
CCATGA

Translation (631 aa):
MFDGYDSCSEDTSSSSSSEESEEEVAPLPSNLPIIKNNGQVYTYPDGKSGMATCEMCGMVGVRDAFYSKT
KRFCSVSCSRSYSSNSKKASILARLQGKPPTKKAKVLQKQPLVAKLAAYAQYQATLQNQAKTKAGNSAIS
VEGFSWGNYINSNSFIAAPVACFKHAPMGTCWGDISENVRIEVPNTDCSLPTKVFWIAGIIKLAGYNALL
RYEGFENDSSLDFWCNICGSDIHPVGWCAASGKPLVPPRTVQHKYTNWKAFLVKRLTGAKTLPPDFSQKV
SESMQYPFKPCMRVEVVDKRHLCRTRVAVVESVIGGRLRLVYEESEDRTDDFWCHMHSPLIHHIGWSRSI
GHRFKRSDITKKQDGHFDTPPHLFAKVKEVDQSGEWFKEGMKLEAIDPLNLSTICVATIRKVLADGFLMI
GIDGSEAADGSDWFCYHATSPSIFPVGFCEINMIELTPPRGYTKLPFKWFDYLRETGSIAAPVKLFNKDV
PNHGFRVGMKLEAVDLMEPRLICVATVTRIIHRLLRIHFDGWEEEYDQWVDCESPDLYPVGWCQLTGYQL
QPPASQSSRESQSASSKQKKKAKSQQYKGHKKMTTSQLKEELLDGEDYSFLHGASDQESNGSATVYIKQE
P


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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