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Report for CCDS48886.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
48886.1 |
Public |
Mus musculus |
11 |
Cacna1g |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:12291](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:48886.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:12291](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 11 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 48886.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000107790.7 |
ENSMUSP00000103419.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000107790.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000103419.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000107790](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000103419](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001177888.1 |
NP_001171359.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001177888.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001171359.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001177888](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001171359](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001171359.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 48886.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (6798 nt): ATGGATGAGGAAGAGGATGGAGCGGGCGCCGAGGAGTCGGGACAGCCCCGGAGCTTCACGCAGCTCAACG ACCTGTCTGGGGCCGGGGGCCGGCAGGGGCCGGGGTCGACGGAAAAGGACCCGGGCAGCGCGGACTCCGA GGCGGAGGGGCTGCCCTACCCGGCGCTGGCCCCGGTGGTTTTCTTCTACTTGAGCCAGGACAGCCGCCCG CGGAGCTGGTGTCTCCGCACGGTCTGTAACCCGTGGTTCGAGCGAGTCAGCATGCTGGTTATTCTCCTCA ACTGTGTGACTCTGGGTATGTTCAGGCCGTGTGAGGACATTGCCTGTGACTCCCAACGCTGCCGGATCCT GCAGGCCTTCGACGACTTCATCTTTGCCTTCTTTGCTGTGGAAATGGTGGTGAAGATGGTCGCTTTGGGT ATCTTTGGGAAGAAATGTTACCTGGGAGACACTTGGAACCGGCTTGACTTTTTTATCGTCATTGCTGGGA TGCTGGAGTACTCGCTGGACCTGCAGAATGTCAGCTTCTCCGCAGTCAGGACAGTCCGTGTGCTGCGACC GCTCAGGGCCATTAACCGGGTGCCCAGCATGCGCATTCTCGTCACATTACTGCTGGATACCTTGCCTATG CTGGGCAATGTCCTGCTGCTCTGTTTCTTCGTCTTTTTCATCTTTGGCATCGTTGGTGTTCAGCTGTGGG CAGGGCTACTTCGAAACCGATGCTTCCTCCCTGAGAATTTCAGCCTCCCGCTGAGTGTGGACTTGGAGCC TTACTACCAGACAGAGAATGAGGACGAGAGCCCCTTCATCTGCTCTCAGCCTCGGGAGAACGGCATGCGA TCCTGCAGGAGCGTGCCCACACTGCGCGGGGAAGGCGGTGGTGGTCCACCCTGCGGTCTGGACTATGAGG CCTATAACAGTTCCAGCAATACCACCTGTGTCAACTGGAACCAATACTATACCAACTGCTCTGCAGGCGA GCACAACCCCTTCAAAGGCGCCATCAACTTTGACAACATTGGCTATGCCTGGATCGCCATCTTCCAGGTC ATCACACTGGAGGGCTGGGTCGACATCATGTACTTTGTGATGGATGCTCATTCCTTCTACAACTTCATCT ACTTCATTCTTCTCATCATCGTGGGCTCCTTCTTCATGATCAACCTGTGCCTGGTGGTGATCGCCACACA GTTCTCTGAGACCAAGCAACGGGAGAGTCAGCTGATGCGGGAGCAGCGTGTACGATTCCTGTCCAATGCT AGCACCCTGGCAAGCTTCTCTGAGCCAGGCAGCTGCTATGAGGAGCTTCTCAAGTACCTGGTGTACATCC TCCGCAAAGCAGCCCGCAGGCTGGCCCAGGTCTCTAGGGCTGTAGGCGTGCGGGCTGGGTTGCTCAGCAG CCCAGTGGCCCGTGGTGGGCAGGAGCCCCAGCCCAGTGGCAGCTGCTCTCGTTCACACCGTCGTCTGTCT GTCCACCACCTGGTCCACCACCATCACCACCACCATCACCACTACCACCTGGGTAATGGGACGCTCAGAG TTCCCCGGGCCAGCCCAGAGATCCAGGACAGGGATGCCAATGGGTCCCGCTGGCTCATGCTGCCACCACC CTCTACCCCCACTCCCTCTGGGGGCCCTCCGAGGGGTGCGGAGTCTGTACACAGCTTCTACCATGCTGAC TGCCACTTGGAGCCAGTCCGTTGCCAGGCGCCCCCTCCCAGGTCCCCATCGGAGGCATCTGGCAGGACTG TGGGTAGTGGGAAGGTATACCCCACTGTGCATACCAGCCCTCCACCAGAGATGCTGAAGGATAAGGCACT AGTGGAGGTGGCCCCCAGCCCTGGGCCCCCCACCCTCACCAGCTTCAACATCCCACCTGGGCCCTTCAGC TCCATGCACAAGCTCCTGGAGACACAGAGTACGGGAGCCTGCCATAGCTCCTGCAAAATCTCCAGCCCTT GCTCCAAGGCAGACAGTGGAGCCTGTGGGCCGGACAGTTGTCCCTACTGTGCCCGGACAGGAGCAGGGGA GCCAGAGTCCGCTGACCATGAAATGCCTGACTCAGACAGTGAGGCTGTGTATGAGTTCACACAGGACGCT CAGCACAGCGACCTCCGGGATCCCCACAGACGGCGACGGCCGAGCCTGGGCCCAGATGCAGAGCCTAGTT CTGTGCTGGCCTTCTGGAGGCTGATCTGCGACACATTCCGGAAGATCGTAGATAGCAAATACTTTGGCCG GGGAATCATGATCGCTATCCTGGTCAATACCCTCAGCATGGGCATCGAGTACCACGAGCAGCCCGAGGAG CTCACCAACGCCCTGGAAATCAGCAACATCGTCTTCACCAGCCTCTTCGCCTTGGAGATGCTGCTGAAGC TGCTCGTCTACGGTCCCTTCGGCTACATTAAGAATCCCTACAACATCTTTGATGGCGTCATTGTGGTCAT CAGCGTGTGGGAGATTGTGGGCCAGCAGGGAGGTGGCCTGTCGGTGCTGCGGACCTTCCGCCTGATGCGG GTGCTGAAGCTAGTTCGCTTCCTGCCGGCACTGCAGCGGCAGCTCGTGGTGCTCATGAAGACCATGGACA ACGTGGCCACCTTCTGCATGCTGCTCATGCTCTTCATCTTCATCTTCAGCATCCTGGGCATGCACCTTTT TGGTTGCAAGTTCGCATCTGAACGGGATGGGGACACGTTGCCAGACCGGAAGAATTTTGACTCCCTGCTC TGGGCCATTGTCACTGTCTTTCAGATTCTGACTCAGGAAGACTGGAATAAAGTCCTTTACAACGGCATGG CCTCCACGTCATCTTGGGCTGCTCTTTACTTCATCGCCCTCATGACTTTTGGCAACTACGTGCTCTTTAA CCTGCTTGTCGCCATTCTCGTGGAGGGTTTCCAGGCAGAGGGAGATGCCACCAAGTCTGAGTCAGAGCCT GATTTCTTTTCGCCCAGTGTGGATGGTGATGGGGACAGGAAGAAGCGCTTGGCCCTGGTGGCCTTGGGAG AACACTCGGAACTACGAAAGAGCCTTTTGCCACCTCTCATCATCCACACAGCTGCTACACCGATGTCACT GCCCAAGAGCTCCAGCACAGGTGTGGGGGAAGCACTGGGCTCTGGCTCTCGCCGCACCAGTAGCAGTGGG TCCGCTGAGCCTGGAACTGCCCATCATGAGATGAAATCACCGCCAAGTGCCCGAAGCTCCCCGCACAGTC CCTGGAGCGCAGCAAGCAGCTGGACCAGCAGGCGCTCCAGCCGGAACAGCCTGGGCCGGGCCCCCAGCCT GAAGCGTAGGAGCCCAAGCGGGGAGCGGAGGTCCCTGCTGTCTGGAGAGGGTCAGGAGAGCCAGGATGAG GAGGAGAGTTCAGAAGAGGACCGGGCCAGCCCAGCAGGCAGTGATCATCGCCACAGGGGTTCCTTGGAAC GTGAGGCCAAGAGTTCCTTTGACCTGCCTGACACCCTGCAGGTGCCCGGGCTTCATCGAACAGCCAGCGG TCGGAGCTCTGCCTCTGAACACCAAGACTGTAATGGCAAGTCGGCTTCAGGGCGTTTGGCCCGCACCCTG CGGGCTGATGACCCCCCACTGGATGGGGATGATGGCGATGATGAGGGCAACCTGAGCAAAGGGGAACGCT TACGAGCCTGGGTCCGAGCCCGGCTCCCTGCCTGTTGCCGAGAGCGAGATTCCTGGTCTGCCTATATCTT CCCTCCCCAGTCAAGGTTTCGTCTCCTGTGTCACCGGATCATCACCCACAAGATGTTTGACCATGTGGTC CTCGTCATCATCTTCCTCAACTGTATCACCATCGCTATGGAGCGCCCCAAAATTGACCCCCACAGCGCTG AACGCATCTTCCTGACCCTCTCCAACTACATCTTCACGGCAGTCTTCCTGGCTGAAATGACAGTGAAGGT GGTGGCACTGGGCTGGTGCTTTGGGGAGCAGGCCTACCTGCGCAGCAGCTGGAACGTGCTGGACGGCTTG CTGGTGCTCATCTCTGTCATCGACATCCTGGTGTCCATGGTCTCTGACAGCGGCACCAAGATTCTCGGCA TGCTGAGGGTGCTGCGGCTGCTGCGGACCCTACGTCCACTCAGGGTCATCAGCCGGGCCCAGGGGCTGAA GCTGGTGGTAGAGACTCTGATGTCATCCCTCAAACCCATTGGCAACATTGTGGTCATCTGCTGTGCCTTC TTCATCATTTTTGGAATTCTTGGGGTGCAGCTCTTCAAAGGGAAGTTCTTCGTGTGTCAGGGTGAGGACA CCAGGAACATCACTAACAAGTCCGACTGTGCTGAGGCCAGTTACCGGTGGGTCCGGCACAAGTACAACTT TGACAACCTGGGCCAGGCTCTGATGTCCCTGTTTGTGCTGGCCTCCAAGGATGGCTGGGTTGACATCATG TATGATGGACTGGATGCTGTGGGAGTGGACCAGCAGCCCATCATGAACCACAACCCTTGGATGCTGCTCT ACTTCATCTCCTTCCTCCTCATCGTGGCCTTCTTCGTCCTGAACATGTTTGTGGGCGTGGTGGTGGAGAA CTTCCATAAGTGCAGGCAGCACCAGGAGGAGGAGGAGGCGCGGCGGCGGGAGGAGAAGCGACTAAAGAGG CTGGAGAAAAAGAGAAGGAATCTAATGTTGGACGATGTAATTGCTTCCGGCAGCTCAGCCAGCGCTGCGT CAGAAGCCCAGTGCAAACCCTACTACTCTGACTACTCGCGCTTCCGGCTCCTCGTCCACCACCTGTGTAC CAGCCACTACCTGGACCTCTTCATCACTGGTGTCATCGGGCTGAATGTGGTCACGATGGCCATGGAACAT TACCAGCAGCCCCAGATCCTGGACGAGGCTCTGAAGATCTGCAACTACATCTTTACCGTCATCTTTGTCT TGGAGTCAGTATTCAAACTTGTGGCCTTCGGCTTCCGCCGGTTCTTCCAGGACAGGTGGAACCAGCTGGA CCTGGCTATTGTGCTTCTGTCCATCATGGGCATCACGCTGGAAGAGATTGAGGTCAATGCTTCACTGCCC ATCAACCCCACCATCATCCGTATCATGAGGGTGCTCCGCATTGCTCGAGTTCTGAAGCTGTTGAAGATGG CTGTGGGCATGCGGGCACTGCTGGACACGGTGATGCAGGCCCTGCCCCAGGTGGGGAACCTGGGACTTCT CTTCATGCTATTATTTTTCATCTTTGCAGCTCTGGGCGTGGAGCTCTTTGGAGACCTGGAGTGTGATGAG ACACACCCTTGTGAGGGCTTGGGCCGGCATGCCACCTTTAGGAACTTTGGTATGGCCTTTCTGACCCTCT TCCGAGTCTCCACTGGTGACAACTGGAATGGTATTATGAAGGACACCCTCCGGGACTGTGACCAGGAGTC CACCTGCTACAACACCGTCATCTCACCCATCTACTTCGTGTCCTTCGTGCTGACGGCCCAGTTTGTGCTG GTCAACGTGGTCATAGCCGTGCTGATGAAGCACCTGGAAGAGAGCAACAAAGAGGCCAAGGAGGAGGCGG AGTTGGAGGCGGAGCTGGAGCTAGAGATGAAGACACTCAGCCCGCAGCCCCACTCCCCGCTGGGCAGCCC CTTCCTCTGGCCTGGGGTGGAAGGTGTCAATAGCCCTGACAGCCCTAAGCCTGGGGCTCCACACACCACG GCCCACATTGGAGCAGCCTCTTCAGGCTTCTCCCTTGAGCACCCCACGATGGTACCTCACACTGAGGAGG GGCCAGTCCCCCTAGGACCAGACCTGCTGACTGTGAGGAAGTCTGGTGTCAGCCGGACACACTCTCTGCC CAATGACAGCTACATGTGCCGCAATGGGAGCACTGCCGAGAGATCCCTAGGACACAGGGGCTGGGGGCTC CCCAAAGCCCAGTCAGGCTCCATCTTGTCTGTTCACTCCCAACCAGCAGACACCAGCTGCATCCTACAGC TTCCCAAAGATGCACACTATCTGCTCCAGCCTCATGGGGCTCCCACCTGGGGCGCCATCCCTAAACTACC CCCACCTGGCCGCTCCCCTCTGGCTCAGAGGCCTCTCAGGCGCCAGGCAGCAATAAGGACTGACTCCCTG GACGTGCAGGGCCTGGGTAGCCGGGAAGACCTGTTGTCAGAGGTGAGTGGGCCCTCCTGCCCTCTGACCC GCTCCTCATCCTTCTGGGGCGGGTCGAGCATCCAGGTGCAGCAGCGCTCCGGCAGCCAGAGCAAAGTCTC CAAGCACATCCGCCTGCCAGCCCCTTGCCCAGGCCTGGAACCCAGCTGGGCCAAGGACCCTCAAGAGACC AGAAGCAGCTTAGAGCTGGACACGGAGCTGAGCTGGATTTCAGGAGACCTCCTGCCCAGCAGTCAGGAAG AACCCCTGTCCCCACGGGACTTGAAAAAATGCTACAGTGTAGAGGCCCAGAGCTGCCGGCGCAGGCCTGG GTCCTGGCTAGACGAACAGAGGAGACACTCCATCGCTGTCAGCTGCCTGGACAGCGGCTCCCAGCCCCGC CTATGTCCAAGCCCCTCAAGCCTCGGGGGCCAACCTCTTGGGGGCCCTGGGAGCCGGCCTAAGAAAAAAC TCAGCCCACCCAGTATCTCTATAGACCCCCCGGAGAGCCAGGGCCCTCGGCCCCCATGCAGTCCTGGCGT CTGCCTCAGGAGGAGGGCGCCGGCCAGTGACTCGAAGGATCCCTCGGCCTCCAGCCCCCTTGACAGCACG GCTGCCTCACCCTCCCCAAAGAAAGATGCGCTGAGTCTCTCTGGTTTGTCTTCTGACCCAACAGACCTGG ATCCCTGA
Translation (2265 aa): MDEEEDGAGAEESGQPRSFTQLNDLSGAGGRQGPGSTEKDPGSADSEAEGLPYPALAPVVFFYLSQDSRP RSWCLRTVCNPWFERVSMLVILLNCVTLGMFRPCEDIACDSQRCRILQAFDDFIFAFFAVEMVVKMVALG IFGKKCYLGDTWNRLDFFIVIAGMLEYSLDLQNVSFSAVRTVRVLRPLRAINRVPSMRILVTLLLDTLPM LGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLPENFSLPLSVDLEPYYQTENEDESPFICSQPRENGMR SCRSVPTLRGEGGGGPPCGLDYEAYNSSSNTTCVNWNQYYTNCSAGEHNPFKGAINFDNIGYAWIAIFQV ITLEGWVDIMYFVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRESQLMREQRVRFLSNA STLASFSEPGSCYEELLKYLVYILRKAARRLAQVSRAVGVRAGLLSSPVARGGQEPQPSGSCSRSHRRLS VHHLVHHHHHHHHHYHLGNGTLRVPRASPEIQDRDANGSRWLMLPPPSTPTPSGGPPRGAESVHSFYHAD CHLEPVRCQAPPPRSPSEASGRTVGSGKVYPTVHTSPPPEMLKDKALVEVAPSPGPPTLTSFNIPPGPFS SMHKLLETQSTGACHSSCKISSPCSKADSGACGPDSCPYCARTGAGEPESADHEMPDSDSEAVYEFTQDA QHSDLRDPHRRRRPSLGPDAEPSSVLAFWRLICDTFRKIVDSKYFGRGIMIAILVNTLSMGIEYHEQPEE LTNALEISNIVFTSLFALEMLLKLLVYGPFGYIKNPYNIFDGVIVVISVWEIVGQQGGGLSVLRTFRLMR VLKLVRFLPALQRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHLFGCKFASERDGDTLPDRKNFDSLL WAIVTVFQILTQEDWNKVLYNGMASTSSWAALYFIALMTFGNYVLFNLLVAILVEGFQAEGDATKSESEP DFFSPSVDGDGDRKKRLALVALGEHSELRKSLLPPLIIHTAATPMSLPKSSSTGVGEALGSGSRRTSSSG SAEPGTAHHEMKSPPSARSSPHSPWSAASSWTSRRSSRNSLGRAPSLKRRSPSGERRSLLSGEGQESQDE EESSEEDRASPAGSDHRHRGSLEREAKSSFDLPDTLQVPGLHRTASGRSSASEHQDCNGKSASGRLARTL RADDPPLDGDDGDDEGNLSKGERLRAWVRARLPACCRERDSWSAYIFPPQSRFRLLCHRIITHKMFDHVV LVIIFLNCITIAMERPKIDPHSAERIFLTLSNYIFTAVFLAEMTVKVVALGWCFGEQAYLRSSWNVLDGL LVLISVIDILVSMVSDSGTKILGMLRVLRLLRTLRPLRVISRAQGLKLVVETLMSSLKPIGNIVVICCAF FIIFGILGVQLFKGKFFVCQGEDTRNITNKSDCAEASYRWVRHKYNFDNLGQALMSLFVLASKDGWVDIM YDGLDAVGVDQQPIMNHNPWMLLYFISFLLIVAFFVLNMFVGVVVENFHKCRQHQEEEEARRREEKRLKR LEKKRRNLMLDDVIASGSSASAASEAQCKPYYSDYSRFRLLVHHLCTSHYLDLFITGVIGLNVVTMAMEH YQQPQILDEALKICNYIFTVIFVLESVFKLVAFGFRRFFQDRWNQLDLAIVLLSIMGITLEEIEVNASLP INPTIIRIMRVLRIARVLKLLKMAVGMRALLDTVMQALPQVGNLGLLFMLLFFIFAALGVELFGDLECDE THPCEGLGRHATFRNFGMAFLTLFRVSTGDNWNGIMKDTLRDCDQESTCYNTVISPIYFVSFVLTAQFVL VNVVIAVLMKHLEESNKEAKEEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGVNSPDSPKPGAPHTT AHIGAASSGFSLEHPTMVPHTEEGPVPLGPDLLTVRKSGVSRTHSLPNDSYMCRNGSTAERSLGHRGWGL PKAQSGSILSVHSQPADTSCILQLPKDAHYLLQPHGAPTWGAIPKLPPPGRSPLAQRPLRRQAAIRTDSL DVQGLGSREDLLSEVSGPSCPLTRSSSFWGGSSIQVQQRSGSQSKVSKHIRLPAPCPGLEPSWAKDPQET RSSLELDTELSWISGDLLPSSQEEPLSPRDLKKCYSVEAQSCRRRPGSWLDEQRRHSIAVSCLDSGSQPR LCPSPSSLGGQPLGGPGSRPKKKLSPPSISIDPPESQGPRPPCSPGVCLRRRAPASDSKDPSASSPLDST AASPSPKKDALSLSGLSSDPTDLDP
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