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Report for CCDS48893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48893.1 Public Mus musculus 11 Nfe2l1 23 108 98 CCDS HistoryNCBI Gene:18023Re-query CCDS DB by CCDS ID:48893.1Re-query CCDS DB by GeneID:18023See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48893.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169828.7 ENSMUSP00000131585.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169828.7Link to Ensembl Protein Viewer:ENSMUSP00000131585.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169828Re-query CCDS DB by Protein ID:ENSMUSP00000131585
Original member Current member NCBI NM_001130451.1 NP_001123923.1 Accepted alive Link to Nucleotide Sequence:NM_001130451.1Link to Protein Sequence:NP_001123923.1Re-query CCDS DB by Nucleotide ID:NM_001130451Re-query CCDS DB by Protein ID:NP_001123923Link to BLAST:NP_001123923.1
Original member Current member NCBI NM_001130452.1 NP_001123924.1 Accepted alive Link to Nucleotide Sequence:NM_001130452.1Link to Protein Sequence:NP_001123924.1Re-query CCDS DB by Nucleotide ID:NM_001130452Re-query CCDS DB by Protein ID:NP_001123924Link to BLAST:NP_001123924.1

Chromosomal Locations for CCDS 48893.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96819176 96820516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96821251 96821271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGTCCATCATGGAAATGCAGGCTATGGAAGTAAATACATCAGCAAGTGAGATTCTGTACAATGCCCCTC
CTGGAGACCCTCTTAGCACCAACTACAGCCTTGCACCCAACACTCCCATCAATCAGAATGTCAGCCTGCA
TCAGGCGTCCCTGGGGGGCTGCAGTCAGGACTTCTCCCTCTTCAGCCCCGAGGTGGAGAGCCTGCCTGTG
GCTAGCAGCTCCACACTGCTTCCACTCGTCCCCAGCAACTCCACCAGTCTCAACTCCACCTTTGGCTCTA
CCAACCTAGCAGGGCTTTTCTTTCCATCCCAGCTCAATGGCACAGCCAATGACACATCAGGCCCTGAGCT
ACCTGACCCCCTTGGGGGCCTGTTAGACGAAGCTATGCTGGATGAGATCAGCCTGATGGACCTGGCCATT
GAGGAGGGCTTCAACCCGGTGCAGGCTTCCCAGCTCGAAGAGGAGTTTGACTCTGACTCAGGCCTCTCCT
TGGACTCCAGCCATAGCCCTTCCTCTCTGAGCAGCTCTGAAGGGAGCTCTTCTTCTTCCTCCTCCTCCTC
TTCCTCTTCTGCTTCCTCCTCTGCCTCTTCTTCCTTCTCTGAGGAGGGTGCTGTTGGTTACAGCTCTGAC
TCTGAGACCCTAGACCTAGAAGAGGCTGAGGGTGCAGTGGGCTACCAGCCGGAATACTCCAAGTTCTGCC
GCATGAGCTATCAGGATCCTTCTCAGCTCTCTTGCCTTCCCTACTTAGAGCATGTGGGCCACAATCATAC
ATACAATATGGCACCCAGTGCCCTTGACTCTGCTGATCTACCACCACCCAGCACCCTCAAGAAAGGTAGC
AAGGAAAAGCAGGCTGACTTCCTGGACAAGCAGATGAGCCGAGATGAGCACAGAGCCCGAGCCATGAAGA
TCCCATTCACCAATGACAAGATCATCAACCTGCCTGTAGAAGAATTCAATGAGCTGCTGTCCAAATACCA
GCTGAGCGAGGCCCAGCTCAGCCTCATCCGGGATATCCGGCGCCGGGGCAAAAACAAGATGGCTGCACAG
AACTGCCGCAAGCGCAAGTTGGACACCATCCTAAACCTAGAACGTGATGTGGAGGACTTGCAGCGAGATA
AGGCCCGATTGCTTCGAGAAAAGGTAGAGTTCCTTCGGTCTCTGCGACAGATGAAGCAGAAGGTCCAAAG
CTTATACCAGGAGGTGTTTGGGCGGCTGCGGGATGAGCATGGGAGGCCCTACTCACCCAGTCAGTATGCC
CTTCAGTATGCTGGGGATGGCAGTGTCCTCCTCATTCCTCGCACGATGGCTGACCAGCAGGCTCGGCGAC
AGGAGAGAAAGCCAAAGGACCGGAGGAAGTGA

Translation (453 aa):
MSIMEMQAMEVNTSASEILYNAPPGDPLSTNYSLAPNTPINQNVSLHQASLGGCSQDFSLFSPEVESLPV
ASSSTLLPLVPSNSTSLNSTFGSTNLAGLFFPSQLNGTANDTSGPELPDPLGGLLDEAMLDEISLMDLAI
EEGFNPVQASQLEEEFDSDSGLSLDSSHSPSSLSSSEGSSSSSSSSSSSSASSSASSSFSEEGAVGYSSD
SETLDLEEAEGAVGYQPEYSKFCRMSYQDPSQLSCLPYLEHVGHNHTYNMAPSALDSADLPPPSTLKKGS
KEKQADFLDKQMSRDEHRARAMKIPFTNDKIINLPVEEFNELLSKYQLSEAQLSLIRDIRRRGKNKMAAQ
NCRKRKLDTILNLERDVEDLQRDKARLLREKVEFLRSLRQMKQKVQSLYQEVFGRLRDEHGRPYSPSQYA
LQYAGDGSVLLIPRTMADQQARRQERKPKDRRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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