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Report for CCDS48940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48940.1 Public Mus musculus 11 Cd300lg 23 108 98 CCDS HistoryNCBI Gene:52685Re-query CCDS DB by CCDS ID:48940.1Re-query CCDS DB by GeneID:52685See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48940.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107163.8 ENSMUSP00000102781.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107163.8Link to Ensembl Protein Viewer:ENSMUSP00000102781.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107163Re-query CCDS DB by Protein ID:ENSMUSP00000102781
Original member NCBI NM_001160713.1 NP_001154185.1 Updated not alive Link to Nucleotide Sequence:NM_001160713.1Link to Protein Sequence:NP_001154185.1Re-query CCDS DB by Nucleotide ID:NM_001160713Re-query CCDS DB by Protein ID:NP_001154185
Current member NCBI NM_001160713.2 NP_001154185.1 Accepted alive Link to Nucleotide Sequence:NM_001160713.2Link to Protein Sequence:NP_001154185.1Re-query CCDS DB by Nucleotide ID:NM_001160713Re-query CCDS DB by Protein ID:NP_001154185Link to BLAST:NP_001154185.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154185.1 371 Q1ERP8-2 371 100% 0 0

Chromosomal Locations for CCDS 48940.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102041591 102041633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102042972 102043304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102046854 102047187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102048690 102048802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102050478 102050530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102053471 102053590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102054094 102054213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGAGGCCTCTGGTCCTGCTATGGGGCTGCCTGGTGCTCCCAGGTTATGAAGCCCTGAAGGGTCCAAAGG
AGATCAGTGGATTTGAAGGTGACACCGTGTCCCTGCGGTGTACCTACGTGGAGAAGATGAAGGAGCACAG
GAAGTATTGGTGCCGGCAGGGTGGCATCCTGGTGTCACGCTGCGGTGACATTGTCTACGCAAATCAGGAC
CAGGAGGTGACTCGAGGCAGGATGTCCATCCGAGACAGTCCCCAAGAGCTCTCGATGACCGTGATCATGA
GGGACCTTACCCTGAAGGATTCAGGGAAGTACTGGTGTGGGATTGACAGACTGGGCCGCGATGAGTCTTT
TGAGGTTACACTCATTGTCTTTCCAGCTTCTCCTGGTCTCCACCCGACAGTCGTCACGGCCAAACAGGGC
AAGACAGGGGTCAAAGCCCCTGTATTCACCGAGGTGGCCCCAGCCTGGTCTACAGGAACTTCCCAGGTCC
CCCCAGGAATCTCTCCATATGCTGGGAGCTCTCCTCACACAGCGACCCCAGCCCGATCTGCAGGAACCTC
CCAGGTTCCCCCAGGAATCTCTCCATATGCTGGGAGGTCTCCTCACACAGCGACCTCTCCTCATGCAGGG
AGCTCCCGTCCAGTCGTCTGGCTGCCCCTTACCACGCCACAGGACTCCAGGGCTGTAGCCAGCAGTGTCT
CCAAGCCCAGTGTGTCCATCCCGATGGTCCGCATGATGGCCCCAGTCCTGATACTCTTGTCCCTGCTGTT
GGCTGCAGGACTAATTGCCTTTGGCAGCCACATGCTCCGGTGGAGAAAGAAAGCTTGGCTGGCCACAGAG
ACACAGAAGAACGAGAAGGTCTACCTTGAAACCTCGCTGCCAGGGAACGGCTGGACCACTGAAGACTCGA
CGATAGACCTTGCAGTGACTCCTGAATGTCTCAGAAACCTCAACCCTTCTGCTGTGCCCTCTCCTGAGAC
ACAGAACCTCAGTCAGTCTACAGAGGAGGAAGAGGCAGCTCGTTCCCTGGACGACGACAAGGAGGACGTG
ATGGCACCCCCTCCCTTGCAGATGTCTGCGGAGGAACTGGCCTTCTCTGAGTTCATCTCTGTGTAA

Translation (371 aa):
MRPLVLLWGCLVLPGYEALKGPKEISGFEGDTVSLRCTYVEKMKEHRKYWCRQGGILVSRCGDIVYANQD
QEVTRGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIVFPASPGLHPTVVTAKQG
KTGVKAPVFTEVAPAWSTGTSQVPPGISPYAGSSPHTATPARSAGTSQVPPGISPYAGRSPHTATSPHAG
SSRPVVWLPLTTPQDSRAVASSVSKPSVSIPMVRMMAPVLILLSLLLAAGLIAFGSHMLRWRKKAWLATE
TQKNEKVYLETSLPGNGWTTEDSTIDLAVTPECLRNLNPSAVPSPETQNLSQSTEEEEAARSLDDDKEDV
MAPPPLQMSAEELAFSEFISV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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