NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49001.1 Public Mus musculus 11 Slc38a10 23 108 98 CCDS HistoryNCBI Gene:72055Re-query CCDS DB by CCDS ID:49001.1Re-query CCDS DB by GeneID:72055See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49001.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076697.12 ENSMUSP00000075989.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076697.12Link to Ensembl Protein Viewer:ENSMUSP00000075989.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000076697Re-query CCDS DB by Protein ID:ENSMUSP00000075989
Original member Current member NCBI NM_001164802.1 NP_001158274.1 Accepted alive Link to Nucleotide Sequence:NM_001164802.1Link to Protein Sequence:NP_001158274.1Re-query CCDS DB by Nucleotide ID:NM_001164802Re-query CCDS DB by Protein ID:NP_001158274Link to BLAST:NP_001158274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158274.1 408 Q5I012-5 408 100% 0 0

Chromosomal Locations for CCDS 49001.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120119049 120119144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120128423 120128529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120129201 120129312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120132677 120132859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120134780 120134882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120137857 120137981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120138986 120139129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120140593 120140686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120141600 120141645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120147721 120147838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120150980 120151078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGACGGCCGCCTCCACCTCCAAGTGGGGGCTGATCACGAACGTGGTGAACAGCATCGTGGGCGTCAGCG
TGCTCACCATGCCTTTCTGCTTCAAGCAGTGTGGCATTGTCCTGGGGGCCCTGCTCCTGGTCTTCTGCTC
CTGGATGACACACCAGTCTTGCATGTTCTTGGTGAAGTCGGCCAGCCTGAGCAAGAGGAGGACCTATGCT
GGCCTGGCGTTCCACGCCTACGGCAAGGCCGGGAAGATGCTGGTGGAGACCAGCATGATTGGGCTGATGC
TGGGATCCTGCATTACCTTCTATGTCGTGATCGGTGACTTGGGGTCCAACTTCTTTGCTCCGCTGCTTGG
ATTACAGGTGACCAGGACTGTCCGTGTGTTCCTGCTCTTCGCAGTGTCCCTGTTCATTGTGCTCCCGCTC
AGCCTGCAGAGAAACATGATGGCCTCTATCCAGTCCTTCAGTGCCATGGCGCTCCTCTTCTACACCGTCT
TCATGTTCGTGATTGTGCTGTCCTCCCTTAAACATGGCCTCTTTAGTGGGCAGTGGCTGCGACAGGTCAG
CTACATTCGCTGGGAAGGTGTTTTCCGCTGTGTCCCCATCTTTGGCATGTCCTTTGCCTGTCAGTCCCAG
GTCCTGCCCACCTATGACAGCCTGGACGAGCCATCAGTGAAGACCATGAGCTCCATCTTTGCCTCCTCCC
TCAACGTGGTCACCGCCTTCTATGTCATGGTGGGGTTTTTTGGTTACGTCAGCTTCACTGATGCCACCAC
AGGCAATGTGCTGATCCACTTCCCCTCCAACCCGGTGACAGAGATGATCCGAGTGGGCTTCGTGATGTCT
GTGGCTGTGGGCTTCCCCATGATGATTCTGCCGTGCAGGCAGGCCTTGAACACACTGCTGTTTGAGCAGC
AGCAAAAAGATGGAACCTTTGCTGCAGGAGGCTACATGCCCCCACTCCGGTTTAAAGTCCTCACCCTCTC
GGTGGTGTTTGGAACCATGGTTGGTGGGGTCATGATCCCCAATGTGGAAACCATCCTTGGCTTCACAGGA
GCAACGATGGGGAGCCTCATCTGCTTTATCTGCCCGGCTCTGATCTATAAGAAAGCCCACAAGAATGCCC
CCTCAGCCCAGGGTCTCCCTACAGAGCCCTGGCTGTCCTGGTACTCGCTCTATAGACCAGGCTGGCCTCG
AACTCAGGGATCCCCTGACTCACATCCTGAGTGCTGA

Translation (408 aa):
MTAASTSKWGLITNVVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTYA
GLAFHAYGKAGKMLVETSMIGLMLGSCITFYVVIGDLGSNFFAPLLGLQVTRTVRVFLLFAVSLFIVLPL
SLQRNMMASIQSFSAMALLFYTVFMFVIVLSSLKHGLFSGQWLRQVSYIRWEGVFRCVPIFGMSFACQSQ
VLPTYDSLDEPSVKTMSSIFASSLNVVTAFYVMVGFFGYVSFTDATTGNVLIHFPSNPVTEMIRVGFVMS
VAVGFPMMILPCRQALNTLLFEQQQKDGTFAAGGYMPPLRFKVLTLSVVFGTMVGGVMIPNVETILGFTG
ATMGSLICFICPALIYKKAHKNAPSAQGLPTEPWLSWYSLYRPGWPRTQGSPDSHPEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH