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Report for CCDS49086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49086.1 Public Mus musculus 12 Dhrs7 23 108 98 CCDS HistoryNCBI Gene:66375Re-query CCDS DB by CCDS ID:49086.1Re-query CCDS DB by GeneID:66375See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49086.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021512.10 ENSMUSP00000021512.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021512.10Link to Ensembl Protein Viewer:ENSMUSP00000021512.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000021512Re-query CCDS DB by Protein ID:ENSMUSP00000021512
Original member Current member NCBI NM_025522.5 NP_079798.2 Accepted alive Link to Nucleotide Sequence:NM_025522.5Link to Protein Sequence:NP_079798.2Re-query CCDS DB by Nucleotide ID:NM_025522Re-query CCDS DB by Protein ID:NP_079798Link to BLAST:NP_079798.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079798.2 338 Q9CXR1 338 100% 0 0

Chromosomal Locations for CCDS 49086.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 72650573 72650617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72652235 72652450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72653101 72653223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72656300 72656539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72657328 72657434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72659344 72659496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72664629 72664761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGAGCTGGGAGCTGCTGTTGTGGCTGCTGGCGCTGTGCGCGCTGATCCTGCCCCTTGTGCAGCTCTTGC
GCTTTTTGCGGGCGGATGCGGACCTGACCTTGTTGTGGGCTGAATGGCAAGGGCGACGCCCAGAATGGGA
GCTGACTGACATGGTGGTGTGGGTTACTGGAGCGTCAAGTGGCATTGGCGAGGAGCTAGCTTTCCAGTTA
TCTAAACTCGGGGTCTCTCTGGTGCTGTCAGCCCGAAGGGCGCAGGAGCTGGAGCGGGTGAAGAGAAGAT
GCCTGGAAAATGGCAATTTAAAAGAAAAAGATATACTGGTTCTGCCCCTTGACTTGACCGATACAAGTTC
CCATGAGGCAGCCACCAAAGCCGTTCTGCAGGAGTTTGGTAAAATTGACATTTTGGTCAACAACGGTGGA
AGAAGCCAGCGTTCCTTAGTTCTAGAAACCAACTTGGATGTCTTCAAGGAGCTGATAAATCTGAACTACA
TAGGGACAGTATCCTTGACCAAGTGTGTCCTGCCTCACATGATAGAGAGGAAACAAGGGAAGATTGTGAC
TGTGAACAGCATCGCGGGGATTGCCTCTGTGTCCCTTTCCAGTGGCTACTGTGCCAGCAAGCATGCTCTT
CGGGGTTTTTTCAATGCCCTCCATAGTGAGCTCGGCCAATATCCAGGCATAACATTTTGCAACGTTTACC
CGGGGCCTGTGCAGTCCGACATTGTGAAGAATGCCTTCACCGAGGAAGTAACTAAGTCTATGAGAAACAA
CATAGACCAGAGTTACAAGATGCCAACGAGCCGCTGTGTGCGGCTGATGCTCATCTCCATGGCCAATGAT
CTGAAGGAAGTCTGGATCTCTGACCATCCTGTGCTGTTGGGGGCATACATATGGCAGTATATGCCAACCT
GGGCCGCATGGCTAAACTGCAAGTTGGGGAAGGAAAGAATCCAAAACTTTAAGAATAATTTGGATCCAGA
CTTGCCTTATAAATTCTTGAAGGCAAAGAAGGATTGA

Translation (338 aa):
MSWELLLWLLALCALILPLVQLLRFLRADADLTLLWAEWQGRRPEWELTDMVVWVTGASSGIGEELAFQL
SKLGVSLVLSARRAQELERVKRRCLENGNLKEKDILVLPLDLTDTSSHEAATKAVLQEFGKIDILVNNGG
RSQRSLVLETNLDVFKELINLNYIGTVSLTKCVLPHMIERKQGKIVTVNSIAGIASVSLSSGYCASKHAL
RGFFNALHSELGQYPGITFCNVYPGPVQSDIVKNAFTEEVTKSMRNNIDQSYKMPTSRCVRLMLISMAND
LKEVWISDHPVLLGAYIWQYMPTWAAWLNCKLGKERIQNFKNNLDPDLPYKFLKAKKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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