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Report for CCDS49197.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49197.1 Public Mus musculus 12 Cdca7l 23 108 98 CCDS HistoryNCBI Gene:217946Re-query CCDS DB by CCDS ID:49197.1Re-query CCDS DB by GeneID:217946See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49197.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021592.15 ENSMUSP00000021592.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021592.15Link to Ensembl Protein Viewer:ENSMUSP00000021592.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000021592Re-query CCDS DB by Protein ID:ENSMUSP00000021592
Original member NCBI NM_146040.1 NP_666152.1 Updated not alive Link to Nucleotide Sequence:NM_146040.1Link to Protein Sequence:NP_666152.1Re-query CCDS DB by Nucleotide ID:NM_146040Re-query CCDS DB by Protein ID:NP_666152
Current member NCBI NM_146040.2 NP_666152.1 Accepted alive Link to Nucleotide Sequence:NM_146040.2Link to Protein Sequence:NP_666152.1Re-query CCDS DB by Nucleotide ID:NM_146040Re-query CCDS DB by Protein ID:NP_666152Link to BLAST:NP_666152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666152.1 438 Q922M5 438 100% 0 0

Chromosomal Locations for CCDS 49197.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 117843934 117843957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117865030 117865164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117870006 117870137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117872084 117872437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117873721 117873792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117873896 117874066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117874684 117874806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117875575 117875724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117876906 117877042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117877467 117877485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGGAGCTGGCCACGCGCTCCCAGATCCCCAAAGAAGTAGCTGACATCTTCAGTGCTCCCAGTGACGATG
AAGAGTTTGTGGGTTTCCAGGATGATGTTCCCATGCAAAACCTGTCAGAGAGCTGTGGTAGTTTGGACTC
ACGGGAGTTGGAGAAACAGCAGAATGTGTGCTTCCGTTCCAAATACTTCACAGAAGAACTAAGAAGGATT
TTCAAAGAGGACACGGACTCAGAAATGGAAGATTTTGAAGGATTTACAGAGAGCGAGCTGAACATGAGCA
GTAACCCAGAGCTCATGGAGTCGGAGCTGAGTGACAGTGACAAAGCATACCCTGTGATGAATGATGCGGA
GGAAGATGATGAAGAGGAGGCTGCACCTAGAAGGGGCAGGTCCACAAGAAGAAGCAGTTTCGGTCTTCGG
GTAGCCTTTCAGTTCCCCACCAAAAAATTGGCAAGAACACCAGATAAAGATAGCTCACACTTGCTGGACA
GTAAGACGGATCTTAGAAGAAAGAAGAGCTCCAGACAGCCCAAGGGAAAGGAGGACTCTGCTTCTGATGC
CGAGGATGAGTCCAGAGCTGAGAGCCAAGAGAATTCGGATGCTCTGCTGAAAAGGGCCATGAACATCAAA
GAGAACAAGGCTATGCTTGCTCAGTTGTTGGCGGAATTGAATTCGGTGCCAGATTTCTTCCCTGTTCGGA
CACCACCTTCGGCTTCTAGGAGGCGAACACCACGACGGGCCTTCTCAGAGGGACAGATCACACGGCGCAT
GAACCCAACCCGGAGTGCACGACCCCCTGAAAAGTTTGCTCTGGAGAACTTCACCTTCTCAGCCACCAAG
CTTACTGAAGAGCTTTACAGTTTCAGAAGAAGAAAGACAATCAGTGGGGGGAAATGCCAGACGTATAGAC
GTCATCGGATATCTTCTTTCCGCTCAGTGAAAGACATCACTGAGGAAGACTTGGAAAACATTGCCATAAC
TGTGCGTGATAAAGTCTATGATAAAGTGCTTGGTAACACGTGCCATCAGTGCCGGCAGAAGACCATCGAT
ACCAAGACGGTCTGTCGGAACCAGAGCTGTGGTGGTGTGCGGGGACAGTTCTGTGGGCCCTGCCTGCGGA
ATCGCTATGGGGAGGATGTGCGGACAGCGTTGCTGGATCCGAAGTGGACATGTCCTCCCTGCCGTGGCAT
CTGCAATTGCAGTTACTGCCGGAGGCGAGATGGCCGCTGTGCTACTGGAATTCTCATTCATCTGGCCAAG
TTCTACGGTTATGATAATGTCAAGGAGTACCTGGAGAGCTTACAGAAGCAGCTGTAG

Translation (438 aa):
MELATRSQIPKEVADIFSAPSDDEEFVGFQDDVPMQNLSESCGSLDSRELEKQQNVCFRSKYFTEELRRI
FKEDTDSEMEDFEGFTESELNMSSNPELMESELSDSDKAYPVMNDAEEDDEEEAAPRRGRSTRRSSFGLR
VAFQFPTKKLARTPDKDSSHLLDSKTDLRRKKSSRQPKGKEDSASDAEDESRAESQENSDALLKRAMNIK
ENKAMLAQLLAELNSVPDFFPVRTPPSASRRRTPRRAFSEGQITRRMNPTRSARPPEKFALENFTFSATK
LTEELYSFRRRKTISGGKCQTYRRHRISSFRSVKDITEEDLENIAITVRDKVYDKVLGNTCHQCRQKTID
TKTVCRNQSCGGVRGQFCGPCLRNRYGEDVRTALLDPKWTCPPCRGICNCSYCRRRDGRCATGILIHLAK
FYGYDNVKEYLESLQKQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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