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Report for CCDS49271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49271.1 Public Mus musculus 13 Slc34a1 23 108 98 CCDS HistoryNCBI Gene:20505Re-query CCDS DB by CCDS ID:49271.1Re-query CCDS DB by GeneID:20505See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49271.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057167.8 ENSMUSP00000059138.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057167.8Link to Ensembl Protein Viewer:ENSMUSP00000059138.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000057167Re-query CCDS DB by Protein ID:ENSMUSP00000059138
Original member Current member EBI ENSMUST00000225259.1 ENSMUSP00000153038.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225259.1Link to Ensembl Protein Viewer:ENSMUSP00000153038.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225259Re-query CCDS DB by Protein ID:ENSMUSP00000153038
Original member Current member NCBI NM_011392.2 NP_035522.2 Accepted alive Link to Nucleotide Sequence:NM_011392.2Link to Protein Sequence:NP_035522.2Re-query CCDS DB by Nucleotide ID:NM_011392Re-query CCDS DB by Protein ID:NP_035522Link to BLAST:NP_035522.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035522.2 637 Q60825 637 98.5871% 0 9

Chromosomal Locations for CCDS 49271.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55400458 55400566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55400688 55400837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55400925 55401053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55401127 55401270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55402668 55402779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55402905 55403100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55403244 55403339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55408692 55408755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55408993 55409160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55412033 55412149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55412248 55412372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55413134 55413637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGATGTCCTACAGCGAGAGATTGGGGGGACCGGCTGTCTCCCCACTTCCAGTCCGTGGGAGACACATGG
TGCATGGGGCAACCTTTGCTTATGTGCCCAGCCCACAAGTCCTGCACAGGATTCCTGGAACATCCACCTA
TGCCATCTCCAGTCTGAGCCCGGTCACCCTCACAGAGCACAGCTGTCCCTGTGGGGAAGTCCTGGAATGT
CATGACCCACTACCTACCAAGCTGGCTCAGGAAGAGGAGCAAAAGCCAGAGCCCAGGCTGTCCCAGAAGC
TTGCCCAGGTTGGCACGAAGCTCCTGAAGGTGCCTCTGATGCTGGCTTTCCTTTACCTCTTTGTCTGCTC
CCTGGATGTGCTCAGCTCCGCCTTCCAGTTGGCTGGAGGGAAGGTGGCTGGGGACATCTTCAAGGACAAT
GCCATCCTATCCAACCCAGTGGCAGGGCTGGTGGTGGGGATCCTGGTGACAGTTCTGGTGCAGAGTTCCA
GTACCTCTACATCCATCATTGTCAGCATGGTCTCCTCCGGCTTGTTGGAGGTGAGCTCCGCCATTCCGAT
CATCATGGGCTCCAACATCGGAACCTCTGTCACCAACACCATTGTGGCCCTGATGCAGGCAGGGGACAGG
ACTGACTTCAGGCGGGCTTTTGCAGGGGCGACCGTGCATGACTGTTTTAACTGGCTGTCTGTTCTGGTCC
TACTGCCCCTGGAGGCTGCCACGGGCTACCTACACCATGTCACCGGGCTTGTGGTTGCTTCCTTCAACAT
CCGAGGTGGCCGTGATGCCCCCGACCTTCTCAAAGTCATCACAGAGCCCTTCACAAGACTCATCATCCAG
CTGGACAAGTCTGTGATCACCAGCATTGCCGTGGGGGATGAGTCCCTGAGGAATCACAGTCTCATTCGGA
TTTGGTGTCACCCAGACACAACAGAGGCTTCCACTTCTATGTCCAGGGTAGAGGCCATCGGCAGCCTTGC
AAACACCACCATGGAGAAATGCAACCATATCTTCGTGGATACGGGGCTGCCCGACCTGGCCGTGGGGCTC
ATTCTGCTGGCGGGCTCCCTGGTGGTTCTCTGCACTTGTCTTATCCTCCTTGTGAAGATGCTCAACTCCC
TGCTCAAGGGCCAAGTGGCCAATGTCATCCAGAAGGTCATCAACACAGACTTTCCTGCCCCCTTCACCTG
GGTCACGGGCTACTTTGCCATGGTGGTGGGTGCCAGCATGACCTTTGTTGTCCAGAGCAGCTCCGTGTTC
ACCTCAGCCATCACCCCACTCATTGGCCTGGGTGTGATCAGCATTGAGCGGGCCTACCCTCTCACCCTGG
GCTCCAACATTGGCACTACCACTACAGCCATCCTGGCAGCGCTTGCCAGCCCCAGGGAGAAGCTATCCAG
CTCATTTCAGATTGCCCTCTGCCACTTCTTCTTCAACATCTCGGGCATCCTACTGTGGTACCCGCTGCCC
TGCACACGCCTGCCCATACGCATGGCCAAGGCCCTGGGCAAACGCACCGCCAAGTACCGCTGGTTTGCTG
TCCTCTACCTGCTCGTGTGCTTCCTGCTCTTGCCCTCGCTGGTGTTTGGCATTTCCATGGCAGGCTGGCA
GGCTATGGTCGGAGTGGGCACGCCCTTTGGGGCTCTACTGGCCTTTGTGGTGCTTGTTAATGTCCTGCAG
AGCCGAAGTCCCGGGCACCTCCCCAAGTGGCTGCAGACATGGGACTTCCTACCTCGCTGGATGCACTCTT
TGCAGCCCCTGGATGGCCTTATCACAAGAGCCACCTTGTGTTATGCCAGGCCCGAGCCCCGTTCACCCCA
ACTTCCCCCTAGAGTCTTCCTGGAGGAGCTTCCCCCAGCCACGCCCTCCCCCCGCCTGGCACTGCCTGCT
CACCACAATGCCACCCGTCTCTAG

Translation (637 aa):
MMSYSERLGGPAVSPLPVRGRHMVHGATFAYVPSPQVLHRIPGTSTYAISSLSPVTLTEHSCPCGEVLEC
HDPLPTKLAQEEEQKPEPRLSQKLAQVGTKLLKVPLMLAFLYLFVCSLDVLSSAFQLAGGKVAGDIFKDN
AILSNPVAGLVVGILVTVLVQSSSTSTSIIVSMVSSGLLEVSSAIPIIMGSNIGTSVTNTIVALMQAGDR
TDFRRAFAGATVHDCFNWLSVLVLLPLEAATGYLHHVTGLVVASFNIRGGRDAPDLLKVITEPFTRLIIQ
LDKSVITSIAVGDESLRNHSLIRIWCHPDTTEASTSMSRVEAIGSLANTTMEKCNHIFVDTGLPDLAVGL
ILLAGSLVVLCTCLILLVKMLNSLLKGQVANVIQKVINTDFPAPFTWVTGYFAMVVGASMTFVVQSSSVF
TSAITPLIGLGVISIERAYPLTLGSNIGTTTTAILAALASPREKLSSSFQIALCHFFFNISGILLWYPLP
CTRLPIRMAKALGKRTAKYRWFAVLYLLVCFLLLPSLVFGISMAGWQAMVGVGTPFGALLAFVVLVNVLQ
SRSPGHLPKWLQTWDFLPRWMHSLQPLDGLITRATLCYARPEPRSPQLPPRVFLEELPPATPSPRLALPA
HHNATRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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