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Report for CCDS49276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49276.1 Public Mus musculus 13 Pdlim7 23 108 98 CCDS HistoryNCBI Gene:67399Re-query CCDS DB by CCDS ID:49276.1Re-query CCDS DB by GeneID:67399See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069968.12 ENSMUSP00000070153.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069968.12Link to Ensembl Protein Viewer:ENSMUSP00000070153.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069968Re-query CCDS DB by Protein ID:ENSMUSP00000070153
Original member Current member NCBI NM_001114087.2 NP_001107559.1 Accepted alive Link to Nucleotide Sequence:NM_001114087.2Link to Protein Sequence:NP_001107559.1Re-query CCDS DB by Nucleotide ID:NM_001114087Re-query CCDS DB by Protein ID:NP_001107559Link to BLAST:NP_001107559.1

Chromosomal Locations for CCDS 49276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55507027 55507123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55507330 55507366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55507488 55507624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55508208 55508326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55508780 55508810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55508892 55509043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55512312 55512407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGGATTCCTTCAAGGTGGTGCTGGAAGGGCCAGCCCCTTGGGGCTTCCGTCTGCAAGGGGGCAAGGACT
TCAATGTGCCCCTCTCTATCTCTCGGCTCACGCCCGGAGGCAAAGCTGCACAGGCCGGTGTGGCTGTGGG
AGACTGGGTACTGAATATTGACGGTGAGAACGCGGGCAGCCTCACGCACATCGAAGCCCAGAACAAGATC
CGCGCCTGTGGGGAGCGCCTCAGCCTGGGTCTTAGCAGAGCCCAGCCTGTTCAGAGCAAACCACAGAAGG
CCCTGACCCCTCCCGCCGACCCCCCGAGGTACACTTTTGCACCAAGCGCCTCCCTCAACAAGACGGCCCG
GCCCTTCGGGGCACCCCCACCTACTGACAGCACCCTGCGGCAGAATGGACAGTTGCTCAGACAGCCGGTC
CCCGATGCCAGCAAGCAGCGGCTGATGGAGGATACCGAAGACTGGCGGCCGCGGCCGGGGACAGGCCAGT
CCCGCTCCTTCCGCATCCTTGCCCACCTCACGGGCACAGAGTTCATGCAAGACCCGGATGAGGAATTCAT
GAAGAAGTCAAGGGAAAAGTATGTCCTGGAGCTACAGAGCCCACGCTATACACGTCTCCGGGACTGGCAC
CACCAGCGCTCTGCCCACGTGCTCAACGTGCAGTCATAG

Translation (222 aa):
MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGSLTHIEAQNKI
RACGERLSLGLSRAQPVQSKPQKALTPPADPPRYTFAPSASLNKTARPFGAPPPTDSTLRQNGQLLRQPV
PDASKQRLMEDTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEFMKKSREKYVLELQSPRYTRLRDWH
HQRSAHVLNVQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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