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Report for CCDS49322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49322.1 Public Mus musculus 13 Vcan 23 108 98 CCDS HistoryNCBI Gene:13003Re-query CCDS DB by CCDS ID:49322.1Re-query CCDS DB by GeneID:13003See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49322.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109543.8 ENSMUSP00000105170.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109543.8Link to Ensembl Protein Viewer:ENSMUSP00000105170.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109543Re-query CCDS DB by Protein ID:ENSMUSP00000105170
Original member Current member NCBI NM_001134475.1 NP_001127947.1 Accepted alive Link to Nucleotide Sequence:NM_001134475.1Link to Protein Sequence:NP_001127947.1Re-query CCDS DB by Nucleotide ID:NM_001134475Re-query CCDS DB by Protein ID:NP_001127947Link to BLAST:NP_001127947.1

Chromosomal Locations for CCDS 49322.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 89657231 89657358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89657503 89657685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89661917 89662061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89678075 89678157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89679800 89679958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89684400 89684513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89685079 89685192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89712205 89712498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89721567 89721694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89721772 89721946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89725289 89725663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89731459 89731528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGTTGATAAATATGAAAGGCATCTTATGGATGTGCTCAACCTTATTACTAACCCATGCACTACATCAAG
CCAAAATGGAAACCAGCCCACCTGTTAAAGGCTCTCTGTCTGGAAAAGTGGTCCTACCTTGTCATTTTTC
AACCTTACCTACCTTACCACCCAATTACAACACGAGTGAATTTCTCAGAATCAAATGGTCTAAGATGGAA
GTGGACAAAAATGGAAAAGATATAAAGGAGACGACTGTCTTGGTGGCCCAGAACGGAAATATCAAGATTG
GTCAGGACTACAAGGGGCGAGTGTCCGTGCCTACACATCCCGATGATGTAGGTGATGCTTCCCTCACCAT
GGTCAAACTCCGGGCTAGTGATGCAGGCGTCTACCGATGTGATGTCATGTATGGGATTGAAGACACTCAG
GACACCATGTCACTGGCTGTGGATGGTGTTGTGTTTCACTACAGGGCAGCCACCAGCAGGTACACTCTGA
ACTTTGCCGCTGCTCAACAGGCTTGTTTGGATATCGGGGCGGTCATAGCAAGCCCAGAGCAGCTGTTTGC
CGCCTATGAGGATGGATTTGAGCAGTGTGATGCAGGATGGCTGTCTGATCAAACTGTCAGATATCCCATA
CGGGCTCCCCGAGAGGGCTGTTACGGAGACATGATGGGGAAGGAAGGGGTTCGGACCTATGGATTCCGCT
CTCCCCAGGAAACCTATGATGTGTATTGTTATGTGGATCATCTGGATGGCGATGTGTTCCACATCACTGC
TCCCAGTAAGTTCACCTTCGAGGAGGCCGAAGCAGAGTGTACAAGCAGGGATGCGAGGCTGGCGACTGTT
GGAGAACTTCAGGCAGCTTGGAGAAATGGCTTTGACCAATGCGATTACGGCTGGCTGTCGGATGCCAGCG
TGCGGCACCCTGTGACTGTGGCCAGGGCCCAGTGTGGAGGAGGTCTACTTGGGGTGAGAACCCTGTATCG
TTTTGAGAACCAGACATGCTTCCCTCTCCCTGATAGCAGATTTGATGCCTACTGCTTTAAACGACCTGAT
CTCTGCAAAACAAACCCATGCCTCAACGGAGGCACCTGTTATCCTACCGAGACTTCCTATGTGTGCACCT
GTGCACCTGGATACAGCGGAGACCAGTGTGAACTTGATTTTGATGAATGTCACTCTAACCCTTGTCGGAA
TGGTGCCACCTGTGTGGATGGTTTTAATACATTTAGATGTCTCTGTCTCCCAAGTTATGTTGGTGCACTC
TGTGAACAAGACACTGAGACATGTGACTATGGCTGGCACAAATTCCAAGGACAGTGCTACAAGTACTTTG
CTCATCGACGCACATGGGATGCTGCTGAAAGGGAGTGTCGCCTGCAGGGTGCCCACCTCACAAGCATCCT
TTCTCATGAGGAACAAATGTTTGTGAATCGTGTGGGCCATGATTACCAGTGGATCGGCCTCAATGACAAG
ATGTTTGAACATGACTTCCGCTGGACTGACGGCAGTGCACTGCAATATGAGAACTGGAGACCCAACCAGC
CAGACAGTTTCTTTTCTGCAGGAGAAGACTGCGTTGTGATCATTTGGCATGAAAATGGTCAGTGGAATGA
CGTCCCCTGCAATTACCACCTCACCTACACTTGCAAGAAGGGAACAGTTGCTTGCGGCCAACCCCCTGTT
GTAGAAAATGCCAAGACCTTTGGAAAGATGAAACCACGCTATGAAATCAACTCCTTGATTAGATATCACT
GCAAAGATGGTTTCATTCAGCGACACCTTCCAACTATCCGGTGCCTAGGAAACGGGAGATGGGCAATGCC
TAAAATAACCTGCATGAACCCATCTGCATACCAAAGGACTTATTCTAAGAAATACTTAAAAAATTCCTCA
TCCGCAAAGGACAATTCTATAAATACATCAAAACATGAGCATCGCTGGAGCCGGAGGCGGCAGGAAACCA
GGCGCTGA

Translation (655 aa):
MLINMKGILWMCSTLLLTHALHQAKMETSPPVKGSLSGKVVLPCHFSTLPTLPPNYNTSEFLRIKWSKME
VDKNGKDIKETTVLVAQNGNIKIGQDYKGRVSVPTHPDDVGDASLTMVKLRASDAGVYRCDVMYGIEDTQ
DTMSLAVDGVVFHYRAATSRYTLNFAAAQQACLDIGAVIASPEQLFAAYEDGFEQCDAGWLSDQTVRYPI
RAPREGCYGDMMGKEGVRTYGFRSPQETYDVYCYVDHLDGDVFHITAPSKFTFEEAEAECTSRDARLATV
GELQAAWRNGFDQCDYGWLSDASVRHPVTVARAQCGGGLLGVRTLYRFENQTCFPLPDSRFDAYCFKRPD
LCKTNPCLNGGTCYPTETSYVCTCAPGYSGDQCELDFDECHSNPCRNGATCVDGFNTFRCLCLPSYVGAL
CEQDTETCDYGWHKFQGQCYKYFAHRRTWDAAERECRLQGAHLTSILSHEEQMFVNRVGHDYQWIGLNDK
MFEHDFRWTDGSALQYENWRPNQPDSFFSAGEDCVVIIWHENGQWNDVPCNYHLTYTCKKGTVACGQPPV
VENAKTFGKMKPRYEINSLIRYHCKDGFIQRHLPTIRCLGNGRWAMPKITCMNPSAYQRTYSKKYLKNSS
SAKDNSINTSKHEHRWSRRRQETRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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