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Report for CCDS49324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49324.1 Public Mus musculus 13 Vcan 23 108 98 CCDS HistoryNCBI Gene:13003Re-query CCDS DB by CCDS ID:49324.1Re-query CCDS DB by GeneID:13003See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 49324.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109544.8 ENSMUSP00000105171.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109544.8Link to Ensembl Protein Viewer:ENSMUSP00000105171.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109544Re-query CCDS DB by Protein ID:ENSMUSP00000105171
Original member Current member NCBI NM_001134474.1 NP_001127946.1 Accepted alive Link to Nucleotide Sequence:NM_001134474.1Link to Protein Sequence:NP_001127946.1Re-query CCDS DB by Nucleotide ID:NM_001134474Re-query CCDS DB by Protein ID:NP_001127946Link to BLAST:NP_001127946.1

Chromosomal Locations for CCDS 49324.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 89657231 89657358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89657503 89657685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89661917 89662061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89678075 89678157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89679800 89679958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89684400 89684513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89685079 89685192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89702918 89705797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89712205 89712498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89721567 89721694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89721772 89721946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89725289 89725663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89731459 89731528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4848 nt):
ATGTTGATAAATATGAAAGGCATCTTATGGATGTGCTCAACCTTATTACTAACCCATGCACTACATCAAG
CCAAAATGGAAACCAGCCCACCTGTTAAAGGCTCTCTGTCTGGAAAAGTGGTCCTACCTTGTCATTTTTC
AACCTTACCTACCTTACCACCCAATTACAACACGAGTGAATTTCTCAGAATCAAATGGTCTAAGATGGAA
GTGGACAAAAATGGAAAAGATATAAAGGAGACGACTGTCTTGGTGGCCCAGAACGGAAATATCAAGATTG
GTCAGGACTACAAGGGGCGAGTGTCCGTGCCTACACATCCCGATGATGTAGGTGATGCTTCCCTCACCAT
GGTCAAACTCCGGGCTAGTGATGCAGGCGTCTACCGATGTGATGTCATGTATGGGATTGAAGACACTCAG
GACACCATGTCACTGGCTGTGGATGGTGTTGTGTTTCACTACAGGGCAGCCACCAGCAGGTACACTCTGA
ACTTTGCCGCTGCTCAACAGGCTTGTTTGGATATCGGGGCGGTCATAGCAAGCCCAGAGCAGCTGTTTGC
CGCCTATGAGGATGGATTTGAGCAGTGTGATGCAGGATGGCTGTCTGATCAAACTGTCAGATATCCCATA
CGGGCTCCCCGAGAGGGCTGTTACGGAGACATGATGGGGAAGGAAGGGGTTCGGACCTATGGATTCCGCT
CTCCCCAGGAAACCTATGATGTGTATTGTTATGTGGATCATCTGGATGGCGATGTGTTCCACATCACTGC
TCCCAGTAAGTTCACCTTCGAGGAGGCCGAAGCAGAGTGTACAAGCAGGGATGCGAGGCTGGCGACTGTT
GGAGAACTTCAGGCAGCTTGGAGAAATGGCTTTGACCAATGCGATTACGGCTGGCTGTCGGATGCCAGCG
TGCGGCACCCTGTGACTGTGGCCAGGGCCCAGTGTGGAGGAGGTCTACTTGGGGTGAGAACCCTGTATCG
TTTTGAGAACCAGACATGCTTCCCTCTCCCTGATAGCAGATTTGATGCCTACTGCTTTAAACCTAAACAG
AATATATCAGAGGCAACCACCATCGAAATGAATATCCTCGCAGAAACTTCATCACCCAGTTTATCCAAAG
AACCACACATGGTACCTGACAGAGCTACACCAGTCATTCCATTAGCCACCGAATTACCTATTTTTACCAC
ACACTTCCCTCCTGCAGGAAATATAGTCAATTCTGAACAGAAATCTGTAGTCTATTCTCAGGCTATCACA
GGCAGATTAGCCATGGAATCACCCACAACTACTCGGAATACCATCAACTCTTGGGATCTGAATGACTCCT
TGGCTTCTGGGTCAGGGCCACTTGGAATGCCAGACATATCTGAAATTAAGGAGGAGGAACTCCGAAGTAC
AACTGTCATCTCCCAACATGCTACTGGCTCACAGGCTGTAATTACAGAGGATACGCAAACACATGAATCA
GTTTCACAGATTGAACAAATAGAAGTGGGCCCCTTAGTAACATCCATGGAAATCACAAATCATATTTCTC
TCAAGGAATTGCCAGAAAAAAACAAAACACCATATGAATCCACAGAAGTGACCCTGGAACACACGACTGA
AATGCCAACGGTAAGCGCCAGTCCTGAATTGGCAACCACAAGTCACTATGGATTCACCTTGAGAGAAGAT
GATAGAGAAGACAGAACACTGACAGTTAGATCTGATCAGAGCACTCGGGTCTTTAGCCAAATCCCCGAAG
TCATCACAGTATCAAAAACATCAGAAGACACTACCTACTCACAGCTAGGGGACTTAGAGTCCATTTCAAC
ATCAACAATAACCATGCTTGGCACAGATAGATCACTGATAGATAAAGAGAAAGAACCCAAAACTAATGGT
AAGGTGACTGAAGATGAGTTTGGTCAATCACAGCCTACAACTACCTTCCCATCACAGCATCTTACAGAAG
TAGAATTACTTCCATATTCTGGTGACACAACATCAGTAGAGGGAATATCCACAGTTATTTATCCATCATT
ACAAACAGATGTGACACAAGGAAGAGAGAGGACAGAAACACCAAGACCAGAGTTAAAAAAAGATCCGTAC
ACAGTTGATGAAATACCAGAAAAGGTCACTAAAGATCCATTTATAGGTAAAACAGAAGAAGTCTTCTCTG
GAATGCCTCTCTCTACATCTTCCTCAGAGTCCTCAGTGGAAAGGACAGAATCTGTTTCCCCTGCATTGAC
AATTGAGAAGTTAACTGTGAAGCCAACAGAAGCAAGAGATGTGGAAGAAATGACAACCCTGACTAGATTA
GAAACAGATGTTACAAAGTCTGACAAAGATGTTACAAGAGTTCATTTGACCCACAGTACTTTAAATGTGG
AAGTGGTCACAGTATCAAAATGGCCAGGGGATGAAGATAATTCAACTTCAAAGCCTTTACCCTCAACAGA
ACATGCAGGCTTTACAAAATTGCCTCCTGTCCCACTTAGTACTATAGGAATAAATGGAAAAGATAAAGAA
ATCCCAAGTTTCACAGATGGAGGAGGTGAATACACTCTTTTCCCAGATGGTACTCCAAAACCATTAGAAA
AGGTTTCTGAAGAAGATTTAGCATCTGGAGAATTGACAGTCACCTTTCATACATCTACATCAATTGGCAG
TGCAGAAAAGTCAGCTTCAGGAGAGCCTACAACTGGAGACAGGTTTCTGCCCACCACAAGCACAGAAGAC
CAGGTCATCAATGCAACTGCGGAAGGGAGTGCTTTGGGTGAAGATATAGAAGCCTCCAAGCCACTATTTA
CTGGCCCCCCATTTGTCCACACCTCCGATGTAGAAGAATTGGCATTTGTTAATTATAGTAGCACGCAGGA
GCCCACTACTTATGTAGACATATCCCATACTAGTCCTCTTTCTATAATTCCCAAGACAGAATGGAGTGTG
TTGGAAACTTCTGTTTCACTAGAAGATGAGATTCTAGGCAAATCTGATCAAGATATCCTTGAACAGACTC
ATCTAGAAGCAACCATGTCTCCTGGAGCTTTGAGGACAACAGGAGTTTCACAGGGAGAAACCCAGGAAGA
ACCACAAACTCCAGGGAGCCCATTTCCTACTTTCAGTTCTACTGCAGTTATGGCCAAGGAGACAACAGCA
TTTGAAGAGGGGGAGGGGTCAACATATACTCCCTCTGAAGGCAGATTGATGACAGGTTCTGAAAGAGTCC
CAGGTTTAGAAACAACTCCAGTTGGCACATCTTATCCACCTGGTGCAATAACAGACCAGGAAGTGGAAAT
GGATACAATGGTAACACTGATGTCAACCATTAGGCCAACAGTGGTTTCAAGTACAGAGCCAGAAGTAATT
TATGAAGCAGAAGGTAGTAGTCCAACAGAATTTGCATCAACTTTGAGGCCTTTCCAGACTCATGTCACAC
AGCTTATGGAAGAAACTACTGAGGAAGGAAAAAAGGCATCCTTAGATTATACAGATTTAGGCTCAGGGTT
ATTTGAACCCAGAGCCACCGAGCTCCCAAAATTTCCAACAACTCCAAGTGATATCAGTGTCTTTACTGCC
ATCGACAGCCTTCACAGAACGCCACCCTTGAGTCCGTCTTCATCATTCACTGAGGAACAACGTGTCTTTG
AGGAAGAGTCCAGTGAGAAAACAACAGGTGACATACTTCCTGGAGAATCTGTAACACAGCACCCTGTGAC
AACTCTCATTGATATCGTAGCCATGAAAACAGAATCTGATATTGATCACATGACCTCAAAACCTCCTGTA
ACACAGCCAACAAGACCATCAGTTGTGGAAAGAAAAACAACCTCCAAAACTCAAGAGTTGTCTACTTCAA
CACCTGCAGCAGGGACCAAGTTCCACCCTGACATAAATGTTTATATTATTGAGGTCAGAGAAAACAAGAC
AGGACCTGATCTCTGCAAAACAAACCCATGCCTCAACGGAGGCACCTGTTATCCTACCGAGACTTCCTAT
GTGTGCACCTGTGCACCTGGATACAGCGGAGACCAGTGTGAACTTGATTTTGATGAATGTCACTCTAACC
CTTGTCGGAATGGTGCCACCTGTGTGGATGGTTTTAATACATTTAGATGTCTCTGTCTCCCAAGTTATGT
TGGTGCACTCTGTGAACAAGACACTGAGACATGTGACTATGGCTGGCACAAATTCCAAGGACAGTGCTAC
AAGTACTTTGCTCATCGACGCACATGGGATGCTGCTGAAAGGGAGTGTCGCCTGCAGGGTGCCCACCTCA
CAAGCATCCTTTCTCATGAGGAACAAATGTTTGTGAATCGTGTGGGCCATGATTACCAGTGGATCGGCCT
CAATGACAAGATGTTTGAACATGACTTCCGCTGGACTGACGGCAGTGCACTGCAATATGAGAACTGGAGA
CCCAACCAGCCAGACAGTTTCTTTTCTGCAGGAGAAGACTGCGTTGTGATCATTTGGCATGAAAATGGTC
AGTGGAATGACGTCCCCTGCAATTACCACCTCACCTACACTTGCAAGAAGGGAACAGTTGCTTGCGGCCA
ACCCCCTGTTGTAGAAAATGCCAAGACCTTTGGAAAGATGAAACCACGCTATGAAATCAACTCCTTGATT
AGATATCACTGCAAAGATGGTTTCATTCAGCGACACCTTCCAACTATCCGGTGCCTAGGAAACGGGAGAT
GGGCAATGCCTAAAATAACCTGCATGAACCCATCTGCATACCAAAGGACTTATTCTAAGAAATACTTAAA
AAATTCCTCATCCGCAAAGGACAATTCTATAAATACATCAAAACATGAGCATCGCTGGAGCCGGAGGCGG
CAGGAAACCAGGCGCTGA

Translation (1615 aa):
MLINMKGILWMCSTLLLTHALHQAKMETSPPVKGSLSGKVVLPCHFSTLPTLPPNYNTSEFLRIKWSKME
VDKNGKDIKETTVLVAQNGNIKIGQDYKGRVSVPTHPDDVGDASLTMVKLRASDAGVYRCDVMYGIEDTQ
DTMSLAVDGVVFHYRAATSRYTLNFAAAQQACLDIGAVIASPEQLFAAYEDGFEQCDAGWLSDQTVRYPI
RAPREGCYGDMMGKEGVRTYGFRSPQETYDVYCYVDHLDGDVFHITAPSKFTFEEAEAECTSRDARLATV
GELQAAWRNGFDQCDYGWLSDASVRHPVTVARAQCGGGLLGVRTLYRFENQTCFPLPDSRFDAYCFKPKQ
NISEATTIEMNILAETSSPSLSKEPHMVPDRATPVIPLATELPIFTTHFPPAGNIVNSEQKSVVYSQAIT
GRLAMESPTTTRNTINSWDLNDSLASGSGPLGMPDISEIKEEELRSTTVISQHATGSQAVITEDTQTHES
VSQIEQIEVGPLVTSMEITNHISLKELPEKNKTPYESTEVTLEHTTEMPTVSASPELATTSHYGFTLRED
DREDRTLTVRSDQSTRVFSQIPEVITVSKTSEDTTYSQLGDLESISTSTITMLGTDRSLIDKEKEPKTNG
KVTEDEFGQSQPTTTFPSQHLTEVELLPYSGDTTSVEGISTVIYPSLQTDVTQGRERTETPRPELKKDPY
TVDEIPEKVTKDPFIGKTEEVFSGMPLSTSSSESSVERTESVSPALTIEKLTVKPTEARDVEEMTTLTRL
ETDVTKSDKDVTRVHLTHSTLNVEVVTVSKWPGDEDNSTSKPLPSTEHAGFTKLPPVPLSTIGINGKDKE
IPSFTDGGGEYTLFPDGTPKPLEKVSEEDLASGELTVTFHTSTSIGSAEKSASGEPTTGDRFLPTTSTED
QVINATAEGSALGEDIEASKPLFTGPPFVHTSDVEELAFVNYSSTQEPTTYVDISHTSPLSIIPKTEWSV
LETSVSLEDEILGKSDQDILEQTHLEATMSPGALRTTGVSQGETQEEPQTPGSPFPTFSSTAVMAKETTA
FEEGEGSTYTPSEGRLMTGSERVPGLETTPVGTSYPPGAITDQEVEMDTMVTLMSTIRPTVVSSTEPEVI
YEAEGSSPTEFASTLRPFQTHVTQLMEETTEEGKKASLDYTDLGSGLFEPRATELPKFPTTPSDISVFTA
IDSLHRTPPLSPSSSFTEEQRVFEEESSEKTTGDILPGESVTQHPVTTLIDIVAMKTESDIDHMTSKPPV
TQPTRPSVVERKTTSKTQELSTSTPAAGTKFHPDINVYIIEVRENKTGPDLCKTNPCLNGGTCYPTETSY
VCTCAPGYSGDQCELDFDECHSNPCRNGATCVDGFNTFRCLCLPSYVGALCEQDTETCDYGWHKFQGQCY
KYFAHRRTWDAAERECRLQGAHLTSILSHEEQMFVNRVGHDYQWIGLNDKMFEHDFRWTDGSALQYENWR
PNQPDSFFSAGEDCVVIIWHENGQWNDVPCNYHLTYTCKKGTVACGQPPVVENAKTFGKMKPRYEINSLI
RYHCKDGFIQRHLPTIRCLGNGRWAMPKITCMNPSAYQRTYSKKYLKNSSSAKDNSINTSKHEHRWSRRR
QETRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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