NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49356.1 Public Mus musculus 13 Kif2a 23 108 98 CCDS HistoryNCBI Gene:16563Re-query CCDS DB by CCDS ID:49356.1Re-query CCDS DB by GeneID:16563See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49356.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022204.15 ENSMUSP00000022204.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022204.15Link to Ensembl Protein Viewer:ENSMUSP00000022204.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000022204Re-query CCDS DB by Protein ID:ENSMUSP00000022204
Original member Current member NCBI NM_001145779.1 NP_001139251.1 Accepted alive Link to Nucleotide Sequence:NM_001145779.1Link to Protein Sequence:NP_001139251.1Re-query CCDS DB by Nucleotide ID:NM_001145779Re-query CCDS DB by Protein ID:NP_001139251Link to BLAST:NP_001139251.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139251.1 705 P28740-3 705 100% 0 0

Chromosomal Locations for CCDS 49356.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 106962139 106962224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106964341 106964476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106965018 106965119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106968638 106968788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106974495 106974562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106975371 106975481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106976656 106976860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106976986 106977128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106978024 106978115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106978972 106979035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106979477 106979567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106982524 106982686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106983192 106983246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106985064 106985159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106987269 106987369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106987953 106988075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106990038 106990092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106993163 106993279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106993848 106993942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 107022012 107022075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2118 nt):
ATGGCAACGGCCAACTTCGGCAAGATCCAGATCGGGATTTACGTGGAGATCAAGCGCAGCGATGGCCGAA
TACACCAAGCAATGGTAACATCTTTAAATGAAGATAATGAAAGTGTAACTGTTGAGTGGATAGAAAATGG
AGATACGAAAGGCAAAGAGATTGACTTGGAGAGCATCTTTTCACTTAACCCTGACCTTGTACCTGATGAA
GATATTGAGCCCAGTCCAGAACTACCTCCACCCTCGTCATCCTCAAAAGTTAACAAAATTGTAAAGAACC
GGCGGACTGTGGCAGCTGTTAAGAATGACCCTCCCCCGAGAGATAATAGAGTGGTTGGTTCAGCACGCGC
ACGGCCTAGTCAGCTTCCTGAGCAATCGTCTTCTGCACAACAGAATGGTAGCGTTTCAGATATATCTCCA
GTTCAAGCTGCAAAAAAGGAGTTTGGCCCTCCTTCACGTAGAAAATCCAATTGTGTGAAAGAAGTAGAAA
AATTGCAAGAAAAACGAGAAAAAAGGAGATTGCAACAGCAAGAACTTAGAGAAAAAAGAGCCCAGGATGT
TGATGCTACAAATCCAAATTACGAAATTATGTGTATGATCAGAGACTTCAGAGGGAGCTTGGATTACAGA
CCCCTAACAACAGCAGATCCTATTGATGAACATAGGATATGTGTTTGTGTAAGAAAACGACCACTCAATA
AAAAAGAAACTCAAATGAAAGATCTTGATGTGATCACAATCCCTAGTAAAGATGTTGTGATGGTCCACGA
ACCCAAACAGAAAGTAGACTTAACAAGGTACTTAGAAAATCAGACATTTCGGTTTGATTACGCCTTCGAT
GACTCAGCTCCTAATGAAATGGTTTACAGGTTTACTGCTAGGCCACTAGTGGAAACAATATTTGAAAGGG
GCATGGCTACGTGCTTTGCTTATGGGCAGACTGGAAGTGGGAAAACTCATACTATGGGTGGTGACTTTTC
AGGAAAGAACCAGGATTGTTCTAAGGGAATTTATGCATTAGCAGCTCGCGATGTCTTTTTAATGCTGAAG
AAGCCAAACTATAAGAAACTAGAACTTCAAGTATATGCAACATTTTTTGAAATTTATAGTGGAAAGGTGT
TTGACTTACTAAATAGGAAAACAAAATTAAGAGTACTAGAAGATGGGAAGCAGCAGGTCCAAGTGGTGGG
GCTGCAGGAGCGGGAGGTGAAGTGTGTGGAGGACGTGCTGAAGCTCATCGACATAGGCAACAGCTGCAGA
ACATCTGGCCAAACATCTGCAAATGCACATTCATCTCGGAGCCATGCAGTGTTCCAGATCATTCTAAGAA
GGAAGGGGAAACTACATGGTAAATTTTCTCTCATTGACCTGGCTGGGAACGAAAGAGGAGCTGATACATC
CAGTGCAGACAGGCAAACCAGGCTTGAAGGTGCTGAAATTAATAAAAGCCTTTTAGCACTCAAGGAGTGC
ATCCGAGCCTTAGGTAGAAACAAACCCCATACGCCTTTCCGAGCGAGCAAACTCACTCAGGTGCTGAGAG
ATTCCTTCATAGGTGAAAATTCTCGTACCTGCATGATTGCCACAATCTCTCCAGGAATGGCATCCTGTGA
AAATACTCTTAATACGTTAAGATATGCAAATAGGGTGAAAGAATTGACTGTAAATCCAGCTGCTGCTGGC
GATGTCCATCCAATAATGCACCATCCACCGAGCCAGATTGATGACTTAGAGACACAGTGGGGTGTGGGGA
GTTCTCCTCAGAGAGATGATCTAAAACTTCTCTGTGAACAAAATGAAGAAGAAGTTTCTCCACAGCTGTT
CACTTTCCATGAAGCTGTCTCCCAGATGGTAGAGATGGAAGAGCAGGTTGTGGAAGATCATAGGGCAGTG
TTCCAGGAATCCATTCGCTGGATAGAAGATGAAAAGGCTCTCCTAGAGATGACTGAAGAAGTAGACTATG
ATGTAGACTCATATGCTACACAACTTGAAGCTATTCTTGAGCAAAAAATAGACATTTTAACTGAGTTACG
AGATAAAGTGAAATCTTTTCGCGCAGCGCTACAAGAAGAAGAGCAAGCAAGCAAGCAAATTAACCCCAAG
AGGCCCCGAGCCCTCTAA

Translation (705 aa):
MATANFGKIQIGIYVEIKRSDGRIHQAMVTSLNEDNESVTVEWIENGDTKGKEIDLESIFSLNPDLVPDE
DIEPSPELPPPSSSSKVNKIVKNRRTVAAVKNDPPPRDNRVVGSARARPSQLPEQSSSAQQNGSVSDISP
VQAAKKEFGPPSRRKSNCVKEVEKLQEKREKRRLQQQELREKRAQDVDATNPNYEIMCMIRDFRGSLDYR
PLTTADPIDEHRICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFD
DSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLK
KPNYKKLELQVYATFFEIYSGKVFDLLNRKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCR
TSGQTSANAHSSRSHAVFQIILRRKGKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKEC
IRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKELTVNPAAAG
DVHPIMHHPPSQIDDLETQWGVGSSPQRDDLKLLCEQNEEEVSPQLFTFHEAVSQMVEMEEQVVEDHRAV
FQESIRWIEDEKALLEMTEEVDYDVDSYATQLEAILEQKIDILTELRDKVKSFRAALQEEEQASKQINPK
RPRAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH