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Report for CCDS49365.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49365.1 Public Mus musculus 13 Ankrd55 23 108 98 CCDS HistoryNCBI Gene:77318Re-query CCDS DB by CCDS ID:49365.1Re-query CCDS DB by GeneID:77318See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49365.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165593.8 ENSMUSP00000126199.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165593.8Link to Ensembl Protein Viewer:ENSMUSP00000126199.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165593Re-query CCDS DB by Protein ID:ENSMUSP00000126199
Original member Current member NCBI NM_001168403.1 NP_001161875.1 Accepted alive Link to Nucleotide Sequence:NM_001168403.1Link to Protein Sequence:NP_001161875.1Re-query CCDS DB by Nucleotide ID:NM_001168403Re-query CCDS DB by Protein ID:NP_001161875Link to BLAST:NP_001161875.1

Chromosomal Locations for CCDS 49365.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 112318454 112318547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112323052 112323182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112327129 112327238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112336215 112336275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112348734 112348862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112355906 112356090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112363415 112363582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112367684 112368348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112381129 112381221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112383419 112383579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGGTGTATCAGGCAGCATCGAATGGAGATGTCAACTCTCTGACCTCCGTCATTCGGGAGGATCCGTCCA
TCCTGGAGTGTTGTGACAGTGAAGGATGCACGCCCTTGATGCACGCGGTTTCAGGACGTCAAGTGGACAC
AGTGAAATTGCTGCTAAAGATGGGTGCCAACATTAACACACAGGATGCGTATGGTCGCACCAGTTTATGC
CTGGCAACCTACCTGGGCTGGCTTGAAGGCTGTGTGAGTCTGCTCAGAAACGGTGCCAAGCACAACATCC
CAGATAAAAATGGCCGCCTACCTCTGCACGCTGCCACTGCAGAGCCTGATGTGAGGCTCCTCATAGTCCT
GCTGCAGCAGTCCAGCCTCAGTGAGATCAACCATCAAGACACAGAGGGGATGACGCCACTCCATTGGGCA
GCTTTCCACAACCGGCCTCAACACACCCAAATGCTGTTGAAGAAGGGGGCAGACCCCACCCTTGTGGACA
AGGATTTTAAAACAGCCCTCCACTGGGCAGTCCAGAGTGGAAATAGAATTCTGTGCTCCATCATTCTGAG
CCATCGGCAGGGCCCGTCCATTATCAACTACGACGACGAGAGTGGGAAGACGTGCGTCCATATCGCTGCA
GCTTCCGGTTTCGGAGACATCATCAACGATTTGGCAAAGGTCCCCGAGTGTAACCTGCAGGCTCTGGATG
TGGATGACAGGACACCCCTGCACTGGGCTGCAGCTTCTGGAAAGGCAGAATGTGTCCAGTCACTGCTGGA
TCTGGGCATGGACAGCAACCTAAGGGACATTAACGAGAGCACGCCCCTGGCCTACGCCTTGTACTGCGGT
CACACGGCCTGTGTCCGGCTCCTTTCCCGAGAAGGCCGAGCAGAGCCTGCTAGGCCTCTTCCCTCCCAAA
ACAGCCAACCCCAAAAGAAGGAAGGACGATTCAGCATGCTCAACCAAATCTTCTGCAAAAACAAGAAAGA
GGAGCAGAAAGCCCATCAGAAAGACCAGAGCAGGGCCAGACCTAAGGAGGAGGAGACCTCGGAAGTCAAT
GACATCATCGCCACCTTTGACAGTGTCGTGGATACCAACTGCCAAGGTCAGCCTGGTGACCAGGTGGACA
TGGTTGTCTTTAAGAAGAGGACCTCGGAGAATTCAAAGTATCTCTTGCCAGAAAAGAAATCCCTGGCCCG
CAAGGGGCTCCCACCAATCAGAACCCAGAGTCTCCCACCCATCACCCTGGGCGGTCACTTCCTGACAGCC
TCCCAGGGAGCCGTGTCCCATGCTGGCCTGAACGCTGGTCCTCAGCATACTGCCCAGCGTTCTCAGAAAA
GTCGAAGCGAACAGGACTTATTAAATAATAGGACTGGCTGCCCGGTGTCACTAGAGAATCCTTGGAAGGG
TGACACCAGGCAGGTGTTCTCCTGCAAGGCTTGGACCGTGTCTTCTTCTGATAAGTTACTAGACAGGCTG
TTCGCTGGCCAGCCTGGTCACCAGGAGCTCTCTGGGCCACCACATCTTCCTCATCTACATAATCCCTCAT
CAGGACAAGCTCTTCAGCATCTCTCCCCAAACAGACCTAAAATCAGAGATCTCCCCTTCACTCGGAACAG
CCTTGCACCTCTGCCAGACCAAAAATTTCTATCTGGAGAACCCCTGAGAACAAACCGGGTGCTTCCAGCA
ATTCCAAGCCAGAGGGGACATGACCCATCACCAGCTGGAGAGAGCCAGAGGGGACATGACCCACCACGAG
CTGAAGAGAGCGGGGGTTCCTCCAGTCCCACCCATGATGAAAACTAA

Translation (598 aa):
MVYQAASNGDVNSLTSVIREDPSILECCDSEGCTPLMHAVSGRQVDTVKLLLKMGANINTQDAYGRTSLC
LATYLGWLEGCVSLLRNGAKHNIPDKNGRLPLHAATAEPDVRLLIVLLQQSSLSEINHQDTEGMTPLHWA
AFHNRPQHTQMLLKKGADPTLVDKDFKTALHWAVQSGNRILCSIILSHRQGPSIINYDDESGKTCVHIAA
ASGFGDIINDLAKVPECNLQALDVDDRTPLHWAAASGKAECVQSLLDLGMDSNLRDINESTPLAYALYCG
HTACVRLLSREGRAEPARPLPSQNSQPQKKEGRFSMLNQIFCKNKKEEQKAHQKDQSRARPKEEETSEVN
DIIATFDSVVDTNCQGQPGDQVDMVVFKKRTSENSKYLLPEKKSLARKGLPPIRTQSLPPITLGGHFLTA
SQGAVSHAGLNAGPQHTAQRSQKSRSEQDLLNNRTGCPVSLENPWKGDTRQVFSCKAWTVSSSDKLLDRL
FAGQPGHQELSGPPHLPHLHNPSSGQALQHLSPNRPKIRDLPFTRNSLAPLPDQKFLSGEPLRTNRVLPA
IPSQRGHDPSPAGESQRGHDPPRAEESGGSSSPTHDEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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