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Report for CCDS49493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49493.1 Public Mus musculus 14 Cpne6 23 108 98 CCDS HistoryNCBI Gene:12891Re-query CCDS DB by CCDS ID:49493.1Re-query CCDS DB by GeneID:12891See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49493.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165262.7 ENSMUSP00000132999.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165262.7Link to Ensembl Protein Viewer:ENSMUSP00000132999.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165262Re-query CCDS DB by Protein ID:ENSMUSP00000132999
Original member Current member NCBI NM_001146183.2 NP_001139655.1 Accepted alive Link to Nucleotide Sequence:NM_001146183.2Link to Protein Sequence:NP_001139655.1Re-query CCDS DB by Nucleotide ID:NM_001146183Re-query CCDS DB by Protein ID:NP_001139655Link to BLAST:NP_001139655.1

Chromosomal Locations for CCDS 49493.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55511985 55512152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55512582 55512761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55513172 55513246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55513388 55513462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55513634 55513717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55513807 55513896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55514234 55514338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55514565 55514651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55515219 55515278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55515523 55515656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55515728 55515782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55515863 55515914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55516252 55516385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55516530 55516763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55516950 55517087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGTCGGACCCAGAGATGGGATGGGTGCCTGAGCCCCCGGCCATGACCCTGGGAGCCTCTCGAGTGGAGC
TGCGGGTGTCCTGCCATGGCCTGCTGGACCGAGACACGCTCACAAAGCCGCATCCATGTGTGCTGCTCAA
ACTCTACTCGGATGAGCAGTGGGTGGAGGTGGAACGCACGGAGGTGCTTCGCTCCTGTTCAAGCCCAGTC
TTCTCCCGGGTGCTGGCCATTGAATACTTTTTTGAAGAGAAGCAGCCTTTGCAGTTCCACGTGTTCGATG
CCGAGGATGGAGCCACCAGCCCCAGCAGCGACACCTTCCTCGGGTCTACGGAGTGCACCTTGGGCCAGAT
TGTGTCACAAACCAAGGTCACTAAGCCATTACTGCTGAAGAATGGGAAGACGGCGGGCAAGTCTACTATC
ACGATTGTGGCTGAGGAGGTATCAGGTACCAACGACTATGTGCAACTTACCTTCAGAGCCCACAAGCTGG
ATAACAAGGATCTGTTCAGCAAGTCTGACCCCTTCATGGAGATTTATAAGACCAATGGAGACCAGAGTGA
CCAACTGGTCTGGAGGACTGAGGTGGTGAAAAACAACCTGAACCCCAGCTGGGAGCCATTCCGCCTGTCC
TTGCATTCTTTGTGCAGCTGTGACATCCACAGGCCGCTCAAGTTCCTGGTATATGACTATGACTCCAGTG
GAAAGCACGACTTCATCGGCGAGTTCACCAGCACATTCCAGGAAATGCAAGAGGGGACCGCAAACCCTGG
GCAGGAGATGCAGTGGGACTGTATCAACCCCAAGTACCGAGACAAGAAGAAGAATTACAAGAGCTCAGGG
ACAGTCGTGCTGGCCCAGTGCACCGTGGAAAAAGTCCACACCTTCCTGGATTATATCATGGGTGGCTGCC
AGATCAGCTTCACGGTGGCTATCGACTTCACTGCCTCCAATGGGGACCCAAGGAGCAGCCAGTCTCTGCA
CTGCCTCAGCCCCCGACAGCCCAACCACTACCTGCAGGCCTTGCGCACAGTGGGCGGTATCTGCCAGGAC
TATGACAGTGATAAGCGGTTCCCAGCTTTTGGCTTCGGAGCTCGAATCCCCCCAAACTTTGAGGTCTCCC
ATGACTTTGCTATCAACTTTGACCCAGAAAATCCTGAATGTGAAGAGATCTCAGGGGTCATAGCCTCCTA
CCGCCGCTGCTTGCCTCAGATCCAGCTCTATGGTCCTACCAACGTGGCCCCTATCATCAACCGTGTGGCT
GAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGTATTCAGTACTGCTGGTGCTCACTGACGGTG
TGGTGAGTGATATGGCAGAGACCCGAACAGCCATTGTGCGAGCCTCCCGCCTGCCCATGTCAATCATCAT
CGTGGGTGTGGGCAACGCTGACTTCTCTGACATGAGGCTACTGGACGGAGATGATGGTCCCCTGCGTTGC
CCAAAGGGGGTACCTGCAGCCCGTGACATTGTCCAGTTTGTGCCCTTCAGGGACTTCAAGGACGCTGCCC
CCTCTGCACTAGCTAAGTGTGTCCTGGCAGAGGTGCCACGGCAGGTGGTAGAGTACTATGCCAGCCAAGG
TATCAGTCCCGGGGCTCCCAGGCCCTCCACGCCAGCTATGACTCCCAGCCCTAGCCCATGA

Translation (556 aa):
MSDPEMGWVPEPPAMTLGASRVELRVSCHGLLDRDTLTKPHPCVLLKLYSDEQWVEVERTEVLRSCSSPV
FSRVLAIEYFFEEKQPLQFHVFDAEDGATSPSSDTFLGSTECTLGQIVSQTKVTKPLLLKNGKTAGKSTI
TIVAEEVSGTNDYVQLTFRAHKLDNKDLFSKSDPFMEIYKTNGDQSDQLVWRTEVVKNNLNPSWEPFRLS
LHSLCSCDIHRPLKFLVYDYDSSGKHDFIGEFTSTFQEMQEGTANPGQEMQWDCINPKYRDKKKNYKSSG
TVVLAQCTVEKVHTFLDYIMGGCQISFTVAIDFTASNGDPRSSQSLHCLSPRQPNHYLQALRTVGGICQD
YDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPIINRVA
EPAQREQSTGQATYSVLLVLTDGVVSDMAETRTAIVRASRLPMSIIIVGVGNADFSDMRLLDGDDGPLRC
PKGVPAARDIVQFVPFRDFKDAAPSALAKCVLAEVPRQVVEYYASQGISPGAPRPSTPAMTPSPSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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