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Report for CCDS49500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49500.1 Public Mus musculus 14 Nfatc4 23 108 98 CCDS HistoryNCBI Gene:73181Re-query CCDS DB by CCDS ID:49500.1Re-query CCDS DB by GeneID:73181See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49500.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172271.8 ENSMUSP00000132763.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172271.8Link to Ensembl Protein Viewer:ENSMUSP00000132763.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172271Re-query CCDS DB by Protein ID:ENSMUSP00000132763
Original member Current member NCBI NM_001168346.1 NP_001161818.1 Accepted alive Link to Nucleotide Sequence:NM_001168346.1Link to Protein Sequence:NP_001161818.1Re-query CCDS DB by Nucleotide ID:NM_001168346Re-query CCDS DB by Protein ID:NP_001161818Link to BLAST:NP_001161818.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161818.1 890 Q8K120-2 890 100% 0 0

Chromosomal Locations for CCDS 49500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55825037 55825136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55826158 55827253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55828603 55828765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55829365 55829564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55829894 55830066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55830456 55830596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55831653 55831708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55831948 55832074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55832223 55832839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2673 nt):
ATGGGGGCCGCAAGCTGCGAGGATGAGGAGCTGGAATTTAAGCTGGTGTTCGGAGAGGAAAAGGAGCCCC
CCCCGCTGGGCCCTGGGGGTCCTGGGGAAGAGCTGGACTCAGAGGATACCCCTCCATGCTGTCGTTTGGC
CCTGGGGGAACCCCTTCCTTATGGTGCTGCCCCTATTGGGATTCCCCGACCCCCACCCCCTCGGCCAGGG
ATGCACTCACCACCGCCCCGTCCCGCCCCTTCACCTGGCACCTGGGAGAGCCAGCCAGCTAGGTCGGTGA
GGCTGGGGGGCCCAGGAGGTAATGCAGGGGGTGCTGGGGGTGGTCGTGTTCTTGAGTGTCCCAGCATCCG
GATTACCTCCATCTCTCCCACGCCTGACCCGCCGACCTCGCTAGAGGACACATCTGAAACTTGGGGGGAC
GGCTCTCCTAGAGATTACCCTCCACCAGAAGGCTTTGGGGGCTATCGAGAGGCTGGAGGTCAGGGCGGAG
GCGCTTTCTTCAGCCCGAGCCCTGGCAGCAGCAGCCTGTCTTCGTGGAGCTTCTTCTCGGACGCCTCCGA
CGAGGCAGCCCTGTATGCAGCGTGCGACGAGGTGGAGTCTGAACTTAATGAAGCAGCCTCCCGTTTTGGC
TTGAGCTCTCCGCTGCCCTCGCCCCGGGCTTCTCCTAGGCCATGGACCCCGGAGGATCCCTGGAGCCTAT
ACGGTCCAAGCTCGGGAGGCCGAGCGCCAGAGGATAGCTGGCTACTCCTCAGCGCTCCTGGGCCCGTCCC
AGCCTCCCCTCGGCCTGCTTCTCCCTGCGGCAAGCGGCGCTATTCCAGTTCCGGAACCCCATCTTCGGCC
TCCCCAGCTTTGTCCCGCCGAGGCAGCCTTGGGGAAGAAGGTCCAGAGCCACCTCCACCACCCCCGTTGC
CTCTGGTCCGGGACCCTAGTTCCCCTGGCCCTTTTGACTATGTGGGTGCTCCACCAACCGAGAGCATCCC
TCAGAAAACTCGGAGGACTTCTAGCGAGCAAGCAGTGGCCCTGCCTCGGTCTGAAGAGCCTCCCTCGTGC
AATGGGAAGCTACCCTCCGGTACAGAGGACTCTGTGGCTGCTCCGGGGGCTCTGCGGAAAGAGGTGGCCG
GCATGGATTACCTAGCAGTGCCTTCTCCCCTTGCTTGGTCCAAGGCCCGGATTGGGGGACACAGCCCCAT
CTTCAGGACCTCTGCCCTACCTCCCCTGGACTGGCCTTTACCCAGCCAGTATGAGCAGCTGGAGCTGAGG
ATCGAGGTACAGCCTAGAGCACACCACCGAGCTCACTATGAGACTGAGGGCAGCCGGGGGGCTGTCAAGG
CTGCTCCTGGAGGCCACCCTGTGGTCAAGCTCCTAGGCTACAGTGAGAAGCCATTGACTCTGCAGATGTT
CATTGGCACTGCAGATGAGAGGAGCCTGCGGCCCCATGCCTTCTACCAGGTGCACCGGATTACTGGCAAG
ATGGTGGCTACAGCCAGCTATGAAGCTGTAGTCAGTGGTACCAAAGTGTTGGAGATGACCTTACTCCCAG
AGAACAACATGGCTGCCAACATTGACTGTGCTGGAATCCTGAAGCTTCGAAATTCAGACATTGAGCTACG
GAAGGGTGAGACAGACATCGGGCGCAAAAACACGCGTGTGCGGCTGGTGTTCCGTGTGCACGTGCCTCAG
GGCGGCGGGAAGGTCGTGTCTGTGCAGGCAGCATCAGTGCCCATCGAGTGCTCCCAGCGCTCGGCCCAGG
AGCTGCCCCAGGTGGAGACCTACAGCCCCAGTGCCTGCTCTGTGAGAGGAGGGGAGGAGCTAGTGTTGAC
TGGTTCCAACTTCCTGCCAGACTCTAAAGTGGTGTTCATTGAGAGGGGTCCTGATGGAAAACTGCAGTGG
GAGGAAGAGGCAGCGGTGAACCGACTGCAGAGCAGTGAGGTGACATTGACTCTCACCATCCCCGAGTACA
GCAACAAGCGGGTGTCCCGACCAGTCCAGGTCTACTTTTACGTCTCCAATGGACGGAGGAAGCGCAGTCC
TACCCAAAGTTTCAAGTTCCTACCTGTGGTCTTCAAGGAGGAGCCCCTACCAGACTCATCTCTCCGGGGC
TTCCCTTCCACATCGGGTCCCCCCTTTGGCCCTGACGTGGACTTCTCACCGCCCAGGCCCCCTTACCCCT
CCTATCCCCATGAAGACCCTGCTTATGAGACTCCTTATCTGTCAGAAGGCTTTGGTTATAGCACACCCGC
TCTGTACCCCCAGACGGGGCCCCCACCGTCCTATAGATCTGGCCTGCGGATGTTCCCTGAGACTGGGGGT
ACCACAGGTTGTGCCCGCCTACCTTCAGTCTCTTTCCTTCCGCGCCCCTTTCCTGGTGATCAATATGGAG
GACAGGGCTCCTCTTTTGCCCTGGGGCTTCCATTCTCCCCTCCAGCCCCCTTTAGGCCGCCACTGCCTTC
CTCCCCACCACTCGAAGACCCCTTCCATCCCCAGAGTGCCATCCACCCCTTACCTCCTGAGGGCTACAAT
GAGGTGGGGCCAGGCTATACCCCTGGGGAGGGGGCTTCGGAGCAGGAGAAAGCCAGGGGTGGCTACAGCA
GCGGCTTCAGAGACAGTGTACCTATCCAGGGTATCACCCTGGAGGAAGGTGGGTGTGGGACTGGGGGCTG
CGAGTGTAAGTGA

Translation (890 aa):
MGAASCEDEELEFKLVFGEEKEPPPLGPGGPGEELDSEDTPPCCRLALGEPLPYGAAPIGIPRPPPPRPG
MHSPPPRPAPSPGTWESQPARSVRLGGPGGNAGGAGGGRVLECPSIRITSISPTPDPPTSLEDTSETWGD
GSPRDYPPPEGFGGYREAGGQGGGAFFSPSPGSSSLSSWSFFSDASDEAALYAACDEVESELNEAASRFG
LSSPLPSPRASPRPWTPEDPWSLYGPSSGGRAPEDSWLLLSAPGPVPASPRPASPCGKRRYSSSGTPSSA
SPALSRRGSLGEEGPEPPPPPPLPLVRDPSSPGPFDYVGAPPTESIPQKTRRTSSEQAVALPRSEEPPSC
NGKLPSGTEDSVAAPGALRKEVAGMDYLAVPSPLAWSKARIGGHSPIFRTSALPPLDWPLPSQYEQLELR
IEVQPRAHHRAHYETEGSRGAVKAAPGGHPVVKLLGYSEKPLTLQMFIGTADERSLRPHAFYQVHRITGK
MVATASYEAVVSGTKVLEMTLLPENNMAANIDCAGILKLRNSDIELRKGETDIGRKNTRVRLVFRVHVPQ
GGGKVVSVQAASVPIECSQRSAQELPQVETYSPSACSVRGGEELVLTGSNFLPDSKVVFIERGPDGKLQW
EEEAAVNRLQSSEVTLTLTIPEYSNKRVSRPVQVYFYVSNGRRKRSPTQSFKFLPVVFKEEPLPDSSLRG
FPSTSGPPFGPDVDFSPPRPPYPSYPHEDPAYETPYLSEGFGYSTPALYPQTGPPPSYRSGLRMFPETGG
TTGCARLPSVSFLPRPFPGDQYGGQGSSFALGLPFSPPAPFRPPLPSSPPLEDPFHPQSAIHPLPPEGYN
EVGPGYTPGEGASEQEKARGGYSSGFRDSVPIQGITLEEGGCGTGGCECK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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