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Report for CCDS49709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49709.1 Public Mus musculus 15 Pdzrn4 23 108 98 CCDS HistoryNCBI Gene:239618Re-query CCDS DB by CCDS ID:49709.1Re-query CCDS DB by GeneID:239618See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49709.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169942.9 ENSMUSP00000133159.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169942.9Link to Ensembl Protein Viewer:ENSMUSP00000133159.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169942Re-query CCDS DB by Protein ID:ENSMUSP00000133159
Original member Current member NCBI NM_001164593.1 NP_001158065.1 Accepted alive Link to Nucleotide Sequence:NM_001164593.1Link to Protein Sequence:NP_001158065.1Re-query CCDS DB by Nucleotide ID:NM_001164593Re-query CCDS DB by Protein ID:NP_001158065Link to BLAST:NP_001158065.1

Chromosomal Locations for CCDS 49709.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 92396915 92397505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92399747 92399833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92401929 92402036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92677501 92677757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92680441 92680543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92743571 92743669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92746242 92746304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92752698 92752799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92757638 92757754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92769496 92771013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3045 nt):
ATGGGCTTCGCTTTGGAGCGTCTCGCGGAAGCCGTGGACCCCGCTTTCCAGTGCCAGCTACTGTGTGGCC
AGGTACTGGAGGAGCCCGCGTGCACGCCTTGCGGGCACGTCTTCTGCGCCAGCTGCCTGCTGCCCTGGGC
GGCGGGGAGACGCTGGTGCCCGCTGCAGTGCCAGCCGCTGGCGCCGGGCGAGCTGTACCGGGTGCTGCCG
CTGCGCAGCCTGGTCCAGCAACTGCGCGTGCAGTGCAACTACAGCGGACAGGGCTGTGGCCACAGGGGCG
ACTGCGGGTGCTGGCAGTGCACATCCAGCGCTGCGCCTTCGGCCCTGCCAGCGGCTGTGACAGCCACTGC
CCAGGCGGCTGCGGAGGCGGCGGGGAGGAAAAGCACCCGGCGACCAAGACCTGCTGGAGTGGGGACGCGC
GTGAGGGGCCACCCGGACCTGGAGGTCGGCCTCTGGTTGTCGCCTGCTGTCGGGGTGGGGAAGACGCGGC
GGGCGCAGGTCAGCTTGTTGCAGCGCAGGTATCAGGAGAAGTTGGCTCTGTACATGGCGCACACGCGCAA
CTTCGTCGGGAACCCGGGAGGCCGCGGCCAGGATGGAGAGCAGAAGCCGTTCACTGTTGTGTTGGAAAGA
GAAGATGACACTTTGGGATTCAACATAATAGGAGGCCGCCCATATCAGAATTCCCAGAAGCAATCAGCGC
CTGAAGGAATTTATGTCTCAAAAATTTTAGAAAACGGACCTGCAGACCGAGCAGATGGCCTGGAGGTTCA
TGACAAAATCATTGCGGTCAATGGCAGGGATCTCTCAAAGGCCACTCATGAAGAGGCAGTGGAAGCTTTT
CGAACTGCCAAGGAGCCCATAGTGGTACAGGTGTTAAGGCGGACTCCCCTCAGCCGGCCAACATACGGCA
TGACTCCGGAAGTACAGCTCACGAATGCCAGCACACAGACGGACATCACTTTTGAACACATCATGGCCCT
GGCGAAGCTTCGGCCACTCACCCCTCCGGTGCCTGACACCTGTCCATTTTTGCTTTCAGACAGCTGCCAC
TCCCTTCATCCGATGGAGCATGGGTTTTATGAAGACCATGAGTACGTCTCCAGCTTGCCCGCTGATGCAG
ACAGAGCAGATGACTTTGAATATGAGGAGGTCGAGCTGTGTCGTGTTAGCAGTCAAGAGAAGCTGGGCCT
GACAGTCTGCTACCGAACCGATGATGAAGAAGACACGGGCATTTATGTCAGCGAGGTTGACCCAAATAGC
ATTGCTGCCAAGGATGGCCGGATTCGAGAAGGGGATCGTATTTTACAAATAAATGGGGAAGACATCCAAA
ACCGGGAAGAGGCCGTGGCTCTGCTCTCCAGCGATGAGTGTAAGAGAATCGTGCTGCTCATCGCCAGGCC
CGACATGCAGCTGGATGAAGGCTGGCTGGAAGATGAAAGGAACGAATTCTTAGAGGAGTTAAACTCAGAG
CTGCTGGAGGAAGACCATAATGAAGGAGCACAGCGCACAGCCTCTGAGCTGCAGCAGCCAAAAAAACAGG
AGGAAGAAGAAGGCACAACAGACACGGCCACCTCCTCTTCCAACAACCAGGAGAAGGACAGTGGCGTGGG
GCGCACGGATGAGAGCTTGCGGAATGATGAGAGCTCAGAGCAGGAGAACGCAGTGGAGGAGCCCCACAGC
ACCACCCTGAAGAGCAAGAGAGAGCTGGGGAAGAGCCAAGACACGCTAGGGAGCCTTGAGCATCAATGCA
GTGAGAGTTGTGCTGGGGGTGAGTGCTTAGACTCCGACTGTGCCAGCAACCAGGAGGTGTGTGAAGGCTT
CCAGCAGCTGTTGGAGCTTAAGATTCGAAACCACGGAGATTACGACCTGTACTACTCAAGCAGTACCATC
GAGTGCAATCGAGGGGAACAGGATGGGGTGGAGCACGAGCTGCAGCTGCTTAACGAGGAGCTGCGAAACA
TTGAGCTAGAGTGCCAGAACATCATGCAGGCCCACAGGCTCCAGAAAGTGACGGACCAATACGGAGACAT
CTGGGCATTGCATGATGGGGGATTCCGAAATTACAACACCAGCCTGGATGTGCAACGGGGGAAACTGGAT
GACATCATGGAACACCCAGAAAAGTCAGACAAGGACAGCTCGAGTGCGTACAATACGGCAGAGAGCTGCA
GAAGCACTCCGCTGACTGTAGACAGGTCCCCGGACAGTTCCCTTCCAAGAATGATCAACCTCACCAATAA
GAAAAATCTGAGAAGCATGATGACAGCCCATCAGTCCCCTCCCAGACAGAGCACCAGGGAATACACATCT
ACCAAAGTCAAAGCCACCGATGAAGGTTGCAGCGTCGAAAGCCTGGAGAAGGGTCTAGAAAGCAGCCAGC
TTCTGGACCAGGAGCACACAGTCAGTGAGCATCCTCCATACCTCTCTCCTTATCACAGCTCCTCCTACAG
ATATGCCAACATTCCGGCGCATGCCCGGCATTATCAAAGCTACATGCAGTTAATTCAACAGAAATCGGCT
GTGGAGTATGCCCAGAGTCAGCTCAGCTTGGTGAGCATGTGCAAGGAATCACAAAGGGGCTCGGAGCCCA
AGATGGAATGGAAGGTAAAAATTAGGAGTGATGGGACCCGGTACATCACCAAGAGGCCAGTGAGAGACCG
ACTTCTGAAGGAACGTGCCTTAAAGATCAAGGAGGAGCGGAGTGGCATGACCACAGACGACGACACCATG
AGTGAGATGAAAATGGGGCGCTACTGGAGCAAGGAGGAGAGAAAGCAACACCTGGTCCGGGCCAAGGAGC
AAAGGCGGCGCCGGGAGTTCATGATGCGGAGTCGGCTGGAGAGCCTCAAAGAGAGCCCACAGAGCAGCGG
CGAAGGCAAGAAGGAGCTGAGCATCATCGAACTGAGCCACAAAAAGATGATGAAAAAAAGAAACAAGAAA
ATTTTGGATAACTGGATGACAATCCAAGAACTGATGACTCATGGGGCCAAATCCCCAGATGGCACTAGGG
TCCATAATGCCTTTCTGTCGGTGACCACCGTATGA

Translation (1014 aa):
MGFALERLAEAVDPAFQCQLLCGQVLEEPACTPCGHVFCASCLLPWAAGRRWCPLQCQPLAPGELYRVLP
LRSLVQQLRVQCNYSGQGCGHRGDCGCWQCTSSAAPSALPAAVTATAQAAAEAAGRKSTRRPRPAGVGTR
VRGHPDLEVGLWLSPAVGVGKTRRAQVSLLQRRYQEKLALYMAHTRNFVGNPGGRGQDGEQKPFTVVLER
EDDTLGFNIIGGRPYQNSQKQSAPEGIYVSKILENGPADRADGLEVHDKIIAVNGRDLSKATHEEAVEAF
RTAKEPIVVQVLRRTPLSRPTYGMTPEVQLTNASTQTDITFEHIMALAKLRPLTPPVPDTCPFLLSDSCH
SLHPMEHGFYEDHEYVSSLPADADRADDFEYEEVELCRVSSQEKLGLTVCYRTDDEEDTGIYVSEVDPNS
IAAKDGRIREGDRILQINGEDIQNREEAVALLSSDECKRIVLLIARPDMQLDEGWLEDERNEFLEELNSE
LLEEDHNEGAQRTASELQQPKKQEEEEGTTDTATSSSNNQEKDSGVGRTDESLRNDESSEQENAVEEPHS
TTLKSKRELGKSQDTLGSLEHQCSESCAGGECLDSDCASNQEVCEGFQQLLELKIRNHGDYDLYYSSSTI
ECNRGEQDGVEHELQLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWALHDGGFRNYNTSLDVQRGKLD
DIMEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRMINLTNKKNLRSMMTAHQSPPRQSTREYTS
TKVKATDEGCSVESLEKGLESSQLLDQEHTVSEHPPYLSPYHSSSYRYANIPAHARHYQSYMQLIQQKSA
VEYAQSQLSLVSMCKESQRGSEPKMEWKVKIRSDGTRYITKRPVRDRLLKERALKIKEERSGMTTDDDTM
SEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRLESLKESPQSSGEGKKELSIIELSHKKMMKKRNKK
ILDNWMTIQELMTHGAKSPDGTRVHNAFLSVTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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